124 related articles for article (PubMed ID: 32516398)
1. Tropical principal component analysis on the space of phylogenetic trees.
Page R; Yoshida R; Zhang L
Bioinformatics; 2020 Nov; 36(17):4590-4598. PubMed ID: 32516398
[TBL] [Abstract][Full Text] [Related]
2. Tropical Principal Component Analysis and Its Application to Phylogenetics.
Yoshida R; Zhang L; Zhang X
Bull Math Biol; 2019 Feb; 81(2):568-597. PubMed ID: 30206809
[TBL] [Abstract][Full Text] [Related]
3. Principal component analysis and the locus of the Fréchet mean in the space of phylogenetic trees.
Nye TMW; Tang X; Weyenberg G; Yoshida R
Biometrika; 2017 Dec; 104(4):901-922. PubMed ID: 29422694
[TBL] [Abstract][Full Text] [Related]
4. Tropical Logistic Regression Model on Space of Phylogenetic Trees.
Aliatimis G; Yoshida R; Boyacı B; Grant JA
Bull Math Biol; 2024 Jul; 86(8):99. PubMed ID: 38954147
[TBL] [Abstract][Full Text] [Related]
5. Particle Gibbs sampling for Bayesian phylogenetic inference.
Wang S; Wang L
Bioinformatics; 2021 May; 37(5):642-649. PubMed ID: 33045053
[TBL] [Abstract][Full Text] [Related]
6. Phylogenetic MCMC algorithms are misleading on mixtures of trees.
Mossel E; Vigoda E
Science; 2005 Sep; 309(5744):2207-9. PubMed ID: 16195459
[TBL] [Abstract][Full Text] [Related]
7. A partial order and cluster-similarity metric on rooted phylogenetic trees.
Hendriksen M; Francis A
J Math Biol; 2020 Apr; 80(5):1265-1290. PubMed ID: 32067071
[TBL] [Abstract][Full Text] [Related]
8. Quantifying MCMC exploration of phylogenetic tree space.
Whidden C; Matsen FA
Syst Biol; 2015 May; 64(3):472-91. PubMed ID: 25631175
[TBL] [Abstract][Full Text] [Related]
9. An Algorithm for Constructing Principal Geodesics in Phylogenetic Treespace.
Nye TM
IEEE/ACM Trans Comput Biol Bioinform; 2014; 11(2):304-15. PubMed ID: 26355778
[TBL] [Abstract][Full Text] [Related]
10. Bayesian phylogenetic inference via Markov chain Monte Carlo methods.
Mau B; Newton MA; Larget B
Biometrics; 1999 Mar; 55(1):1-12. PubMed ID: 11318142
[TBL] [Abstract][Full Text] [Related]
11. Efficient Bayesian inference under the structured coalescent.
Vaughan TG; Kühnert D; Popinga A; Welch D; Drummond AJ
Bioinformatics; 2014 Aug; 30(16):2272-9. PubMed ID: 24753484
[TBL] [Abstract][Full Text] [Related]
12. Tropical Density Estimation of Phylogenetic Trees.
Yoshida R; Barnhill D; Miura K; Howe D
IEEE/ACM Trans Comput Biol Bioinform; 2024 Jun; PP():. PubMed ID: 38941208
[TBL] [Abstract][Full Text] [Related]
13. Monte Carlo estimation of total variation distance of Markov chains on large spaces, with application to phylogenetics.
Herbei R; Kubatko L
Stat Appl Genet Mol Biol; 2013 Mar; 12(1):39-48. PubMed ID: 23459470
[TBL] [Abstract][Full Text] [Related]
14. Guided tree topology proposals for Bayesian phylogenetic inference.
Höhna S; Drummond AJ
Syst Biol; 2012 Jan; 61(1):1-11. PubMed ID: 21828081
[TBL] [Abstract][Full Text] [Related]
15. Bayesian phylogenetic inference using DNA sequences: a Markov Chain Monte Carlo Method.
Yang Z; Rannala B
Mol Biol Evol; 1997 Jul; 14(7):717-24. PubMed ID: 9214744
[TBL] [Abstract][Full Text] [Related]
16. An Efficient Independence Sampler for Updating Branches in Bayesian Markov chain Monte Carlo Sampling of Phylogenetic Trees.
Aberer AJ; Stamatakis A; Ronquist F
Syst Biol; 2016 Jan; 65(1):161-76. PubMed ID: 26231183
[TBL] [Abstract][Full Text] [Related]
17. Comment on "Phylogenetic MCMC algorithms are misleading on mixtures of trees".
Ronquist F; Larget B; Huelsenbeck JP; Kadane JB; Simon D; van der Mark P
Science; 2006 Apr; 312(5772):367; author reply 367. PubMed ID: 16627724
[TBL] [Abstract][Full Text] [Related]
18. Sampling phylogenetic tree space with the generalized Gibbs sampler.
Keith JM; Adams P; Ragan MA; Bryant D
Mol Phylogenet Evol; 2005 Mar; 34(3):459-68. PubMed ID: 15683921
[TBL] [Abstract][Full Text] [Related]
19. BAli-Phy version 3: model-based co-estimation of alignment and phylogeny.
Redelings BD
Bioinformatics; 2021 Sep; 37(18):3032-3034. PubMed ID: 33677478
[TBL] [Abstract][Full Text] [Related]
20. Epidemic Reconstruction in a Phylogenetics Framework: Transmission Trees as Partitions of the Node Set.
Hall M; Woolhouse M; Rambaut A
PLoS Comput Biol; 2015 Dec; 11(12):e1004613. PubMed ID: 26717515
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]