BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

201 related articles for article (PubMed ID: 32520310)

  • 1. Docking of peptides to GPCRs using a combination of CABS-dock with FlexPepDock refinement.
    Badaczewska-Dawid AE; Kmiecik S; Koliński M
    Brief Bioinform; 2021 May; 22(3):. PubMed ID: 32520310
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Protocols for All-Atom Reconstruction and High-Resolution Refinement of Protein-Peptide Complex Structures.
    Badaczewska-Dawid AE; Khramushin A; Kolinski A; Schueler-Furman O; Kmiecik S
    Methods Mol Biol; 2020; 2165():273-287. PubMed ID: 32621231
    [TBL] [Abstract][Full Text] [Related]  

  • 3. CABS-dock web server for the flexible docking of peptides to proteins without prior knowledge of the binding site.
    Kurcinski M; Jamroz M; Blaszczyk M; Kolinski A; Kmiecik S
    Nucleic Acids Res; 2015 Jul; 43(W1):W419-24. PubMed ID: 25943545
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Protein-peptide docking using CABS-dock and contact information.
    Blaszczyk M; Ciemny MP; Kolinski A; Kurcinski M; Kmiecik S
    Brief Bioinform; 2019 Nov; 20(6):2299-2305. PubMed ID: 30247502
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Modeling of protein-peptide interactions using the CABS-dock web server for binding site search and flexible docking.
    Blaszczyk M; Kurcinski M; Kouza M; Wieteska L; Debinski A; Kolinski A; Kmiecik S
    Methods; 2016 Jan; 93():72-83. PubMed ID: 26165956
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Highly Flexible Protein-Peptide Docking Using CABS-Dock.
    Ciemny MP; Kurcinski M; Kozak KJ; Kolinski A; Kmiecik S
    Methods Mol Biol; 2017; 1561():69-94. PubMed ID: 28236234
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Subangstrom accuracy in pHLA-I modeling by Rosetta FlexPepDock refinement protocol.
    Liu T; Pan X; Chao L; Tan W; Qu S; Yang L; Wang B; Mei H
    J Chem Inf Model; 2014 Aug; 54(8):2233-42. PubMed ID: 25050981
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A protocol for CABS-dock protein-peptide docking driven by side-chain contact information.
    Kurcinski M; Blaszczyk M; Ciemny MP; Kolinski A; Kmiecik S
    Biomed Eng Online; 2017 Aug; 16(Suppl 1):73. PubMed ID: 28830545
    [TBL] [Abstract][Full Text] [Related]  

  • 9. CABS-dock standalone: a toolbox for flexible protein-peptide docking.
    Kurcinski M; Pawel Ciemny M; Oleniecki T; Kuriata A; Badaczewska-Dawid AE; Kolinski A; Kmiecik S
    Bioinformatics; 2019 Oct; 35(20):4170-4172. PubMed ID: 30865258
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Flexible docking of peptides to proteins using CABS-dock.
    Kurcinski M; Badaczewska-Dawid A; Kolinski M; Kolinski A; Kmiecik S
    Protein Sci; 2020 Jan; 29(1):211-222. PubMed ID: 31682301
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Galaxy7TM: flexible GPCR-ligand docking by structure refinement.
    Lee GR; Seok C
    Nucleic Acids Res; 2016 Jul; 44(W1):W502-6. PubMed ID: 27131365
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Rosetta FlexPepDock ab-initio: simultaneous folding, docking and refinement of peptides onto their receptors.
    Raveh B; London N; Zimmerman L; Schueler-Furman O
    PLoS One; 2011 Apr; 6(4):e18934. PubMed ID: 21572516
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Integrative modeling of diverse protein-peptide systems using CABS-dock.
    Puławski W; Koliński A; Koliński M
    PLoS Comput Biol; 2023 Jul; 19(7):e1011275. PubMed ID: 37405984
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Rosetta FlexPepDock web server--high resolution modeling of peptide-protein interactions.
    London N; Raveh B; Cohen E; Fathi G; Schueler-Furman O
    Nucleic Acids Res; 2011 Jul; 39(Web Server issue):W249-53. PubMed ID: 21622962
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Modeling beta-sheet peptide-protein interactions: Rosetta FlexPepDock in CAPRI rounds 38-45.
    Khramushin A; Marcu O; Alam N; Shimony O; Padhorny D; Brini E; Dill KA; Vajda S; Kozakov D; Schueler-Furman O
    Proteins; 2020 Aug; 88(8):1037-1049. PubMed ID: 31891416
    [TBL] [Abstract][Full Text] [Related]  

  • 16. InterPepScore: a deep learning score for improving the FlexPepDock refinement protocol.
    Johansson-Åkhe I; Wallner B
    Bioinformatics; 2022 Jun; 38(12):3209-3215. PubMed ID: 35575349
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Hierarchical Flexible Peptide Docking by Conformer Generation and Ensemble Docking of Peptides.
    Zhou P; Li B; Yan Y; Jin B; Wang L; Huang SY
    J Chem Inf Model; 2018 Jun; 58(6):1292-1302. PubMed ID: 29738247
    [TBL] [Abstract][Full Text] [Related]  

  • 18. High-resolution global peptide-protein docking using fragments-based PIPER-FlexPepDock.
    Alam N; Goldstein O; Xia B; Porter KA; Kozakov D; Schueler-Furman O
    PLoS Comput Biol; 2017 Dec; 13(12):e1005905. PubMed ID: 29281622
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Assessment and challenges of ligand docking into comparative models of G-protein coupled receptors.
    Nguyen ED; Norn C; Frimurer TM; Meiler J
    PLoS One; 2013; 8(7):e67302. PubMed ID: 23844000
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Comprehensive Evaluation of Fourteen Docking Programs on Protein-Peptide Complexes.
    Weng G; Gao J; Wang Z; Wang E; Hu X; Yao X; Cao D; Hou T
    J Chem Theory Comput; 2020 Jun; 16(6):3959-3969. PubMed ID: 32324992
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.