265 related articles for article (PubMed ID: 32522884)
1. Nearest-neighbor parameters for predicting DNA duplex stability in diverse molecular crowding conditions.
Ghosh S; Takahashi S; Ohyama T; Endoh T; Tateishi-Karimata H; Sugimoto N
Proc Natl Acad Sci U S A; 2020 Jun; 117(25):14194-14201. PubMed ID: 32522884
[TBL] [Abstract][Full Text] [Related]
2. Validation of the nearest-neighbor model for Watson-Crick self-complementary DNA duplexes in molecular crowding condition.
Ghosh S; Takahashi S; Endoh T; Tateishi-Karimata H; Hazra S; Sugimoto N
Nucleic Acids Res; 2019 Apr; 47(7):3284-3294. PubMed ID: 30753582
[TBL] [Abstract][Full Text] [Related]
3. Thermodynamic characterization and nearest neighbor parameters for RNA duplexes under molecular crowding conditions.
Adams MS; Znosko BM
Nucleic Acids Res; 2019 Apr; 47(7):3658-3666. PubMed ID: 30698818
[TBL] [Abstract][Full Text] [Related]
4. Nearest-neighbor parameters for the prediction of RNA duplex stability in diverse in vitro and cellular-like crowding conditions.
Ghosh S; Takahashi S; Banerjee D; Ohyama T; Endoh T; Tateishi-Karimata H; Sugimoto N
Nucleic Acids Res; 2023 May; 51(9):4101-4111. PubMed ID: 36718808
[TBL] [Abstract][Full Text] [Related]
5. Non-nearest-neighbor dependence of the stability for RNA bulge loops based on the complete set of group I single-nucleotide bulge loops.
Blose JM; Manni ML; Klapec KA; Stranger-Jones Y; Zyra AC; Sim V; Griffith CA; Long JD; Serra MJ
Biochemistry; 2007 Dec; 46(51):15123-35. PubMed ID: 18047298
[TBL] [Abstract][Full Text] [Related]
6. Stabilization of three-way junctions of DNA under molecular crowding conditions.
Muhuri S; Mimura K; Miyoshi D; Sugimoto N
J Am Chem Soc; 2009 Jul; 131(26):9268-80. PubMed ID: 19566098
[TBL] [Abstract][Full Text] [Related]
7. Thermodynamic parameters to predict stability of RNA/DNA hybrid duplexes.
Sugimoto N; Nakano S; Katoh M; Matsumura A; Nakamuta H; Ohmichi T; Yoneyama M; Sasaki M
Biochemistry; 1995 Sep; 34(35):11211-6. PubMed ID: 7545436
[TBL] [Abstract][Full Text] [Related]
8. The effect of molecular crowding with nucleotide length and cosolute structure on DNA duplex stability.
Nakano S; Karimata H; Ohmichi T; Kawakami J; Sugimoto N
J Am Chem Soc; 2004 Nov; 126(44):14330-1. PubMed ID: 15521733
[TBL] [Abstract][Full Text] [Related]
9. Improved thermodynamic parameters and helix initiation factor to predict stability of DNA duplexes.
Sugimoto N; Nakano S; Yoneyama M; Honda K
Nucleic Acids Res; 1996 Nov; 24(22):4501-5. PubMed ID: 8948641
[TBL] [Abstract][Full Text] [Related]
10. Drastic stability change of X-X mismatch in d(CXG) trinucleotide repeat disorders under molecular crowding condition.
Teng Y; Pramanik S; Tateishi-Karimata H; Ohyama T; Sugimoto N
Biochem Biophys Res Commun; 2018 Feb; 496(2):601-607. PubMed ID: 29339157
[TBL] [Abstract][Full Text] [Related]
11. RNA/DNA hybrid duplexes with identical nearest-neighbor base-pairs have identical stability.
Sugimoto N; Katoh M; Nakano S; Ohmichi T; Sasaki M
FEBS Lett; 1994 Oct; 354(1):74-8. PubMed ID: 7525350
[TBL] [Abstract][Full Text] [Related]
12. Conformational flexibility influences degree of hydration of nucleic acid hybrids.
Pramanik S; Nagatoishi S; Saxena S; Bhattacharyya J; Sugimoto N
J Phys Chem B; 2011 Dec; 115(47):13862-72. PubMed ID: 21992117
[TBL] [Abstract][Full Text] [Related]
13. Stabilization of a DNA duplex under molecular crowding conditions of PEG.
Karimata H; Nakano S; Ohmichi T; Kawakami J; Sugimoto N
Nucleic Acids Symp Ser (Oxf); 2004; (48):107-8. PubMed ID: 17150501
[TBL] [Abstract][Full Text] [Related]
14. In-Cell Stability Prediction of RNA/DNA Hybrid Duplexes for Designing Oligonucleotides Aimed at Therapeutics.
Banerjee D; Tateishi-Karimata H; Toplishek M; Ohyama T; Ghosh S; Takahashi S; Trajkovski M; Plavec J; Sugimoto N
J Am Chem Soc; 2023 Nov; 145(43):23503-23518. PubMed ID: 37873979
[TBL] [Abstract][Full Text] [Related]
15. Effect of thiazole orange doubly labeled thymidine on DNA duplex formation.
Kimura Y; Hanami T; Tanaka Y; de Hoon MJ; Soma T; Harbers M; Lezhava A; Hayashizaki Y; Usui K
Biochemistry; 2012 Aug; 51(31):6056-67. PubMed ID: 22765348
[TBL] [Abstract][Full Text] [Related]
16. Correcting for heat capacity and 5'-TA type terminal nearest neighbors improves prediction of DNA melting temperatures using nearest-neighbor thermodynamic models.
Hughesman CB; Turner RF; Haynes C
Biochemistry; 2011 Apr; 50(13):2642-9. PubMed ID: 21323352
[TBL] [Abstract][Full Text] [Related]
17. Improved nearest-neighbor parameters for predicting DNA duplex stability.
SantaLucia J; Allawi HT; Seneviratne PA
Biochemistry; 1996 Mar; 35(11):3555-62. PubMed ID: 8639506
[TBL] [Abstract][Full Text] [Related]
18. Thermodynamic parameters based on a nearest-neighbor model for DNA sequences with a single-bulge loop.
Tanaka F; Kameda A; Yamamoto M; Ohuchi A
Biochemistry; 2004 Jun; 43(22):7143-50. PubMed ID: 15170351
[TBL] [Abstract][Full Text] [Related]
19. Thermodynamic parameters for an expanded nearest-neighbor model for the formation of RNA duplexes with single nucleotide bulges.
Znosko BM; Silvestri SB; Volkman H; Boswell B; Serra MJ
Biochemistry; 2002 Aug; 41(33):10406-17. PubMed ID: 12173927
[TBL] [Abstract][Full Text] [Related]
20. Kinetics and thermodynamics of DNA, RNA, and hybrid duplex formation.
Rauzan B; McMichael E; Cave R; Sevcik LR; Ostrosky K; Whitman E; Stegemann R; Sinclair AL; Serra MJ; Deckert AA
Biochemistry; 2013 Feb; 52(5):765-72. PubMed ID: 23356429
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
