These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

96 related articles for article (PubMed ID: 32531204)

  • 1. Combining Information from Crosslinks and Monolinks in the Modeling of Protein Structures.
    Sinnott M; Malhotra S; Madhusudhan MS; Thalassinos K; Topf M
    Structure; 2020 Sep; 28(9):1061-1070.e3. PubMed ID: 32531204
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Modeling Flexible Protein Structure With AlphaFold2 and Crosslinking Mass Spectrometry.
    Manalastas-Cantos K; Adoni KR; Pfeifer M; Märtens B; Grünewald K; Thalassinos K; Topf M
    Mol Cell Proteomics; 2024 Mar; 23(3):100724. PubMed ID: 38266916
    [TBL] [Abstract][Full Text] [Related]  

  • 3. The Importance of Non-accessible Crosslinks and Solvent Accessible Surface Distance in Modeling Proteins with Restraints From Crosslinking Mass Spectrometry.
    Matthew Allen Bullock J; Schwab J; Thalassinos K; Topf M
    Mol Cell Proteomics; 2016 Jul; 15(7):2491-500. PubMed ID: 27150526
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Jwalk and MNXL web server: model validation using restraints from crosslinking mass spectrometry.
    Bullock JMA; Thalassinos K; Topf M
    Bioinformatics; 2018 Oct; 34(20):3584-3585. PubMed ID: 29741581
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Assessment of chemical-crosslink-assisted protein structure modeling in CASP13.
    Fajardo JE; Shrestha R; Gil N; Belsom A; Crivelli SN; Czaplewski C; Fidelis K; Grudinin S; Karasikov M; Karczyńska AS; Kryshtafovych A; Leitner A; Liwo A; Lubecka EA; Monastyrskyy B; Pagès G; Rappsilber J; Sieradzan AK; Sikorska C; Trabjerg E; Fiser A
    Proteins; 2019 Dec; 87(12):1283-1297. PubMed ID: 31569265
    [TBL] [Abstract][Full Text] [Related]  

  • 6. PyXlinkViewer: A flexible tool for visualization of protein chemical crosslinking data within the PyMOL molecular graphics system.
    Schiffrin B; Radford SE; Brockwell DJ; Calabrese AN
    Protein Sci; 2020 Aug; 29(8):1851-1857. PubMed ID: 32557917
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Quantitative Structural Interpretation of Protein Crosslinks.
    Filella-Merce I; Bardiaux B; Nilges M; Bouvier G
    Structure; 2020 Jan; 28(1):75-82.e4. PubMed ID: 31753619
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Modeling Protein Complexes Using Restraints from Crosslinking Mass Spectrometry.
    Bullock JMA; Sen N; Thalassinos K; Topf M
    Structure; 2018 Jul; 26(7):1015-1024.e2. PubMed ID: 29804821
    [TBL] [Abstract][Full Text] [Related]  

  • 9. IMProv: A Resource for Cross-link-Driven Structure Modeling that Accommodates Protein Dynamics.
    Ziemianowicz DS; Saltzberg D; Pells T; Crowder DA; Schräder C; Hepburn M; Sali A; Schriemer DC
    Mol Cell Proteomics; 2021; 20():100139. PubMed ID: 34418567
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Protein cross-linking analysis using mass spectrometry, isotope-coded cross-linkers, and integrated computational data processing.
    Seebacher J; Mallick P; Zhang N; Eddes JS; Aebersold R; Gelb MH
    J Proteome Res; 2006 Sep; 5(9):2270-82. PubMed ID: 16944939
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Accommodating Protein Dynamics in the Modeling of Chemical Crosslinks.
    Degiacomi MT; Schmidt C; Baldwin AJ; Benesch JLP
    Structure; 2017 Nov; 25(11):1751-1757.e5. PubMed ID: 28966018
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Protein structure dynamics by crosslinking mass spectrometry.
    Chen ZA; Rappsilber J
    Curr Opin Struct Biol; 2023 Jun; 80():102599. PubMed ID: 37104977
    [TBL] [Abstract][Full Text] [Related]  

  • 13. XLmap: an R package to visualize and score protein structure models based on sites of protein cross-linking.
    Schweppe DK; Chavez JD; Bruce JE
    Bioinformatics; 2016 Jan; 32(2):306-8. PubMed ID: 26411867
    [TBL] [Abstract][Full Text] [Related]  

  • 14. The novel isotopically coded short-range photo-reactive crosslinker 2,4,6-triazido-1,3,5-triazine (TATA) for studying protein structures.
    Brodie NI; Petrotchenko EV; Borchers CH
    J Proteomics; 2016 Oct; 149():69-76. PubMed ID: 26931439
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A deep learning model for predicting optimal distance range in crosslinking mass spectrometry data.
    Cohen S; Schneidman-Duhovny D
    Proteomics; 2023 Sep; 23(17):e2200341. PubMed ID: 37070547
    [TBL] [Abstract][Full Text] [Related]  

  • 16. MSX-3D: a tool to validate 3D protein models using mass spectrometry.
    Heymann M; Paramelle D; Subra G; Forest E; Martinez J; Geourjon C; Deléage G
    Bioinformatics; 2008 Dec; 24(23):2782-3. PubMed ID: 18826958
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Protein structure determination using a Riemannian approach.
    Wei X; Li ZC; Li SJ; Peng XB; Zhao Q
    FEBS Lett; 2020 Mar; 594(6):1036-1051. PubMed ID: 31769509
    [TBL] [Abstract][Full Text] [Related]  

  • 18. In-depth analysis of protein inference algorithms using multiple search engines and well-defined metrics.
    Audain E; Uszkoreit J; Sachsenberg T; Pfeuffer J; Liang X; Hermjakob H; Sanchez A; Eisenacher M; Reinert K; Tabb DL; Kohlbacher O; Perez-Riverol Y
    J Proteomics; 2017 Jan; 150():170-182. PubMed ID: 27498275
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13.
    Hou J; Wu T; Cao R; Cheng J
    Proteins; 2019 Dec; 87(12):1165-1178. PubMed ID: 30985027
    [TBL] [Abstract][Full Text] [Related]  

  • 20. The application of new software tools to quantitative protein profiling via isotope-coded affinity tag (ICAT) and tandem mass spectrometry: II. Evaluation of tandem mass spectrometry methodologies for large-scale protein analysis, and the application of statistical tools for data analysis and interpretation.
    von Haller PD; Yi E; Donohoe S; Vaughn K; Keller A; Nesvizhskii AI; Eng J; Li XJ; Goodlett DR; Aebersold R; Watts JD
    Mol Cell Proteomics; 2003 Jul; 2(7):428-42. PubMed ID: 12832459
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 5.