350 related articles for article (PubMed ID: 32543102)
21. [ATAC-seq and its applications in complex disease].
Chen M; Zhang Z; Meng ZY; Zhang XJ
Yi Chuan; 2020 Apr; 42(4):347-353. PubMed ID: 32312703
[TBL] [Abstract][Full Text] [Related]
22. Hydrop enables droplet-based single-cell ATAC-seq and single-cell RNA-seq using dissolvable hydrogel beads.
De Rop FV; Ismail JN; Bravo González-Blas C; Hulselmans GJ; Flerin CC; Janssens J; Theunis K; Christiaens VM; Wouters J; Marcassa G; de Wit J; Poovathingal S; Aerts S
Elife; 2022 Feb; 11():. PubMed ID: 35195064
[TBL] [Abstract][Full Text] [Related]
23. XL-DNase-seq: improved footprinting of dynamic transcription factors.
Oh KS; Ha J; Baek S; Sung MH
Epigenetics Chromatin; 2019 Jun; 12(1):30. PubMed ID: 31164146
[TBL] [Abstract][Full Text] [Related]
24. DeNOPA: decoding nucleosome positions sensitively with sparse ATAC-seq data.
Xu B; Li X; Gao X; Jia Y; Liu J; Li F; Zhang Z
Brief Bioinform; 2022 Jan; 23(1):. PubMed ID: 34875002
[TBL] [Abstract][Full Text] [Related]
25. ATAC-seq Data Processing.
Kim DS
Methods Mol Biol; 2023; 2611():305-323. PubMed ID: 36807076
[TBL] [Abstract][Full Text] [Related]
26. Comparison of differential accessibility analysis strategies for ATAC-seq data.
Gontarz P; Fu S; Xing X; Liu S; Miao B; Bazylianska V; Sharma A; Madden P; Cates K; Yoo A; Moszczynska A; Wang T; Zhang B
Sci Rep; 2020 Jun; 10(1):10150. PubMed ID: 32576878
[TBL] [Abstract][Full Text] [Related]
27. Assay for Transposase-Accessible Chromatin-Sequencing Using
Bright AR; Veenstra GJC
Cold Spring Harb Protoc; 2019 Jan; 2019(1):. PubMed ID: 30042136
[TBL] [Abstract][Full Text] [Related]
28. Chromatin Accessibility Profiling and Data Analysis Using ATAC-seq in
Reeves GA; Singh PP; Brunet A
Cold Spring Harb Protoc; 2024 Mar; 2024(3):107747. PubMed ID: 37100469
[TBL] [Abstract][Full Text] [Related]
29. ATAC-seq normalization method can significantly affect differential accessibility analysis and interpretation.
Reske JJ; Wilson MR; Chandler RL
Epigenetics Chromatin; 2020 Apr; 13(1):22. PubMed ID: 32321567
[TBL] [Abstract][Full Text] [Related]
30. From reads to insight: a hitchhiker's guide to ATAC-seq data analysis.
Yan F; Powell DR; Curtis DJ; Wong NC
Genome Biol; 2020 Feb; 21(1):22. PubMed ID: 32014034
[TBL] [Abstract][Full Text] [Related]
31. maxATAC: Genome-scale transcription-factor binding prediction from ATAC-seq with deep neural networks.
Cazares TA; Rizvi FW; Iyer B; Chen X; Kotliar M; Bejjani AT; Wayman JA; Donmez O; Wronowski B; Parameswaran S; Kottyan LC; Barski A; Weirauch MT; Prasath VBS; Miraldi ER
PLoS Comput Biol; 2023 Jan; 19(1):e1010863. PubMed ID: 36719906
[TBL] [Abstract][Full Text] [Related]
32. ATAC-DEA: A Web-Based ATAC-Seq Data Differential Peak and Annotation Analysis Application.
Zhang S; Wang S
J Comput Biol; 2023 Mar; 30(3):337-345. PubMed ID: 36656543
[TBL] [Abstract][Full Text] [Related]
33. Visualization of the landscape of the read alignment shape of ATAC-seq data using Hellinger distance metric.
Cheng JH; Zheng C; Yamada R; Okada D
Genes Cells; 2024 Jan; 29(1):5-16. PubMed ID: 37989133
[TBL] [Abstract][Full Text] [Related]
34. CoBRA: Containerized Bioinformatics Workflow for Reproducible ChIP/ATAC-seq Analysis.
Qiu X; Feit AS; Feiglin A; Xie Y; Kesten N; Taing L; Perkins J; Gu S; Li Y; Cejas P; Zhou N; Jeselsohn R; Brown M; Shirley Liu X; Long HW
Genomics Proteomics Bioinformatics; 2021 Aug; 19(4):652-661. PubMed ID: 34284136
[TBL] [Abstract][Full Text] [Related]
35. ATAC-seq Assay with Low Mitochondrial DNA Contamination from Primary Human CD4+ T Lymphocytes.
Rickner HD; Niu SY; Cheng CS
J Vis Exp; 2019 Mar; (145):. PubMed ID: 30958473
[TBL] [Abstract][Full Text] [Related]
36. Assessing Chromatin Accessibility During WBR in Acoels.
Gehrke AR; Srivastava M
Methods Mol Biol; 2022; 2450():549-561. PubMed ID: 35359328
[TBL] [Abstract][Full Text] [Related]
37. Protocol for chromatin accessibility profiling of human endothelial cells cultured under fluid shear stress using ATAC-seq.
Raaz L; Mendez PL; Mundlos S; Knaus P; Jatzlau J
STAR Protoc; 2024 Mar; 5(1):102859. PubMed ID: 38329877
[TBL] [Abstract][Full Text] [Related]
38. Exploring Chromatin Accessibility in Mouse Epiblast Stem Cells with ATAC-Seq.
Salehin N; Santucci N; Osteil P; Tam PPL
Methods Mol Biol; 2022; 2490():93-100. PubMed ID: 35486242
[TBL] [Abstract][Full Text] [Related]
39. SeATAC: a tool for exploring the chromatin landscape and the role of pioneer factors.
Gong W; Dsouza N; Garry DJ
Genome Biol; 2023 May; 24(1):125. PubMed ID: 37218013
[TBL] [Abstract][Full Text] [Related]
40. Cell type-specific chromatin accessibility analysis in the mouse and human brain.
Rocks D; Jaric I; Tesfa L; Greally JM; Suzuki M; Kundakovic M
Epigenetics; 2022; 17(2):202-219. PubMed ID: 33775205
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
