BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

159 related articles for article (PubMed ID: 32547592)

  • 1. DeconPeaker, a Deconvolution Model to Identify Cell Types Based on Chromatin Accessibility in ATAC-Seq Data of Mixture Samples.
    Li H; Sharma A; Luo K; Qin ZS; Sun X; Liu H
    Front Genet; 2020; 11():392. PubMed ID: 32547592
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Erratum: DeconPeaker, a Deconvolution Model to Identify Cell Types Based on Chromatin Accessibility in ATAC-Seq Data of Mixture Samples.
    Frontiers Production Office
    Front Genet; 2020; 11():693. PubMed ID: 32655628
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A deconvolution method and its application in analyzing the cellular fractions in acute myeloid leukemia samples.
    Li H; Sharma A; Ming W; Sun X; Liu H
    BMC Genomics; 2020 Sep; 21(1):652. PubMed ID: 32967610
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Folic acid supplementation and malaria susceptibility and severity among people taking antifolate antimalarial drugs in endemic areas.
    Crider K; Williams J; Qi YP; Gutman J; Yeung L; Mai C; Finkelstain J; Mehta S; Pons-Duran C; Menéndez C; Moraleda C; Rogers L; Daniels K; Green P
    Cochrane Database Syst Rev; 2022 Feb; 2(2022):. PubMed ID: 36321557
    [TBL] [Abstract][Full Text] [Related]  

  • 5. ATACgraph: Profiling Genome-Wide Chromatin Accessibility From ATAC-seq.
    Lu RJ; Liu YT; Huang CW; Yen MR; Lin CY; Chen PY
    Front Genet; 2020; 11():618478. PubMed ID: 33584814
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Hydrop enables droplet-based single-cell ATAC-seq and single-cell RNA-seq using dissolvable hydrogel beads.
    De Rop FV; Ismail JN; Bravo González-Blas C; Hulselmans GJ; Flerin CC; Janssens J; Theunis K; Christiaens VM; Wouters J; Marcassa G; de Wit J; Poovathingal S; Aerts S
    Elife; 2022 Feb; 11():. PubMed ID: 35195064
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Regulatory chromatin landscape in
    Tannenbaum M; Sarusi-Portuguez A; Krispil R; Schwartz M; Loza O; Benichou JIC; Mosquna A; Hakim O
    Plant Methods; 2018; 14():113. PubMed ID: 30598689
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Optimization of ATAC-seq in wheat seedling roots using INTACT-isolated nuclei.
    Debernardi JM; Burguener G; Bubb K; Liu Q; Queitsch C; Dubcovsky J
    BMC Plant Biol; 2023 May; 23(1):270. PubMed ID: 37211599
    [TBL] [Abstract][Full Text] [Related]  

  • 9. CDSeq: A novel complete deconvolution method for dissecting heterogeneous samples using gene expression data.
    Kang K; Meng Q; Shats I; Umbach DM; Li M; Li Y; Li X; Li L
    PLoS Comput Biol; 2019 Dec; 15(12):e1007510. PubMed ID: 31790389
    [TBL] [Abstract][Full Text] [Related]  

  • 10. CharPlant: A De Novo Open Chromatin Region Prediction Tool for Plant Genomes.
    Shen Y; Chen LL; Gao J
    Genomics Proteomics Bioinformatics; 2021 Oct; 19(5):860-871. PubMed ID: 33662624
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Deblender: a semi-/unsupervised multi-operational computational method for complete deconvolution of expression data from heterogeneous samples.
    Dimitrakopoulou K; Wik E; Akslen LA; Jonassen I
    BMC Bioinformatics; 2018 Nov; 19(1):408. PubMed ID: 30404611
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Deconvolution of Nascent Sequencing Data Using Transcriptional Regulatory Elements.
    Maas Z; Sigauke R; Dowell R
    Pac Symp Biocomput; 2024; 29():564-578. PubMed ID: 38160307
    [TBL] [Abstract][Full Text] [Related]  

  • 13. ShinyArchR.UiO: user-friendly,integrative and open-source tool for visualization of single-cell ATAC-seq data using ArchR.
    Sharma A; Akshay A; Rogne M; Eskeland R
    Bioinformatics; 2022 Jan; 38(3):834-836. PubMed ID: 34586377
    [TBL] [Abstract][Full Text] [Related]  

  • 14. PI3K signaling specifies proximal-distal fate by driving a developmental gene regulatory network in SOX9+ mouse lung progenitors.
    Khattar D; Fernandes S; Snowball J; Guo M; Gillen MC; Jain SS; Sinner D; Zacharias W; Swarr DT
    Elife; 2022 Aug; 11():. PubMed ID: 35976093
    [TBL] [Abstract][Full Text] [Related]  

  • 15. HArmonized single-cell RNA-seq Cell type Assisted Deconvolution (HASCAD).
    Chiu YJ; Ni CE; Huang YH
    BMC Med Genomics; 2023 Oct; 16(Suppl 2):272. PubMed ID: 37907883
    [TBL] [Abstract][Full Text] [Related]  

  • 16. ATACAmp: a tool for detecting ecDNA/HSRs from bulk and single-cell ATAC-seq data.
    Cheng H; Ma W; Wang K; Chu H; Bao G; Liao Y; Yuan Y; Gou Y; Dong L; Yang J; Cai H
    BMC Genomics; 2023 Nov; 24(1):678. PubMed ID: 37950200
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Improved cell composition deconvolution method of bulk gene expression profiles to quantify subsets of immune cells.
    Chiu YJ; Hsieh YH; Huang YH
    BMC Med Genomics; 2019 Dec; 12(Suppl 8):169. PubMed ID: 31856824
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Chromatin accessibility differences between alpha, beta, and delta cells identifies common and cell type-specific enhancers.
    Mawla AM; van der Meulen T; Huising MO
    BMC Genomics; 2023 Apr; 24(1):202. PubMed ID: 37069576
    [TBL] [Abstract][Full Text] [Related]  

  • 19. MSR1 characterized by chromatin accessibility mediates M2 macrophage polarization to promote gastric cancer progression.
    Chen X; Jiang J; Liu H; Li A; Wang W; Ni Z; Lin M
    Int Immunopharmacol; 2022 Nov; 112():109217. PubMed ID: 36095948
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Comparative Analysis of Cell Mixtures Deconvolution and Gene Signatures Generated for Blood, Immune and Cancer Cells.
    Alonso-Moreda N; Berral-González A; De La Rosa E; González-Velasco O; Sánchez-Santos JM; De Las Rivas J
    Int J Mol Sci; 2023 Jun; 24(13):. PubMed ID: 37445946
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.