These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

196 related articles for article (PubMed ID: 32558637)

  • 1. Evaluation of methods for detecting human reads in microbial sequencing datasets.
    Bush SJ; Connor TR; Peto TEA; Crook DW; Walker AS
    Microb Genom; 2020 Jul; 6(7):. PubMed ID: 32558637
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Benchmarking metagenomics classifiers on ancient viral DNA: a simulation study.
    Arizmendi Cárdenas YO; Neuenschwander S; Malaspinas AS
    PeerJ; 2022; 10():e12784. PubMed ID: 35356467
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Read trimming has minimal effect on bacterial SNP-calling accuracy.
    Bush SJ
    Microb Genom; 2020 Dec; 6(12):. PubMed ID: 33332257
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets.
    Portik DM; Brown CT; Pierce-Ward NT
    BMC Bioinformatics; 2022 Dec; 23(1):541. PubMed ID: 36513983
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Evaluation of tools for taxonomic classification of viruses.
    Cadenas-Castrejón E; Verleyen J; Boukadida C; Díaz-González L; Taboada B
    Brief Funct Genomics; 2023 Jan; 22(1):31-41. PubMed ID: 36335985
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Evaluation and assessment of read-mapping by multiple next-generation sequencing aligners based on genome-wide characteristics.
    Thankaswamy-Kosalai S; Sen P; Nookaew I
    Genomics; 2017 Jul; 109(3-4):186-191. PubMed ID: 28286147
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Comparative study of sequence aligners for detecting antibiotic resistance in bacterial metagenomes.
    McCall C; Xagoraraki I
    Lett Appl Microbiol; 2018 Mar; 66(3):162-168. PubMed ID: 29288551
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Systematic benchmark of ancient DNA read mapping.
    Oliva A; Tobler R; Cooper A; Llamas B; Souilmi Y
    Brief Bioinform; 2021 Sep; 22(5):. PubMed ID: 33834210
    [TBL] [Abstract][Full Text] [Related]  

  • 9. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
    Brown BL; Watson M; Minot SS; Rivera MC; Franklin RB
    Gigascience; 2017 Mar; 6(3):1-10. PubMed ID: 28327976
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Comparison of different assembly and annotation tools on analysis of simulated viral metagenomic communities in the gut.
    Vázquez-Castellanos JF; García-López R; Pérez-Brocal V; Pignatelli M; Moya A
    BMC Genomics; 2014 Jan; 15():37. PubMed ID: 24438450
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Benchmarking Long-Read Assemblers for Genomic Analyses of Bacterial Pathogens Using Oxford Nanopore Sequencing.
    Chen Z; Erickson DL; Meng J
    Int J Mol Sci; 2020 Dec; 21(23):. PubMed ID: 33271875
    [TBL] [Abstract][Full Text] [Related]  

  • 12. HoCoRT: host contamination removal tool.
    Rumbavicius I; Rounge TB; Rognes T
    BMC Bioinformatics; 2023 Oct; 24(1):371. PubMed ID: 37784008
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Benchmarking of methods for identification of antimicrobial resistance genes in bacterial whole genome data.
    Clausen PT; Zankari E; Aarestrup FM; Lund O
    J Antimicrob Chemother; 2016 Sep; 71(9):2484-8. PubMed ID: 27365186
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Short Sequence Aligner Benchmarking for Chromatin Research.
    Carter JL; Stevens H; Ridge PG; Johnson SM
    Int J Mol Sci; 2023 Sep; 24(18):. PubMed ID: 37762379
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Benchmarking taxonomic classifiers with Illumina and Nanopore sequence data for clinical metagenomic diagnostic applications.
    Govender KN; Eyre DW
    Microb Genom; 2022 Oct; 8(10):. PubMed ID: 36269282
    [TBL] [Abstract][Full Text] [Related]  

  • 16.
    MacDonald ML; Polson SW; Lee KH
    mSphere; 2021 Apr; 6(2):. PubMed ID: 33883263
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Calling known variants and identifying new variants while rapidly aligning sequence data.
    VanRaden PM; Bickhart DM; O'Connell JR
    J Dairy Sci; 2019 Apr; 102(4):3216-3229. PubMed ID: 30772032
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Assessing the impact of exact reads on reducing the error rate of read mapping.
    Salari F; Zare-Mirakabad F; Sadeghi M; Rokni-Zadeh H
    BMC Bioinformatics; 2018 Nov; 19(1):406. PubMed ID: 30400807
    [TBL] [Abstract][Full Text] [Related]  

  • 19. SRIdent: A novel pipeline for real-time identification of species from high-throughput sequencing reads in Metagenomics and clinical diagnostic assays.
    Karimi R; Hajdu A
    Annu Int Conf IEEE Eng Med Biol Soc; 2015; 2015():6481-4. PubMed ID: 26737777
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Aligner optimization increases accuracy and decreases compute times in multi-species sequence data.
    Robinson KM; Hawkins AS; Santana-Cruz I; Adkins RS; Shetty AC; Nagaraj S; Sadzewicz L; Tallon LJ; Rasko DA; Fraser CM; Mahurkar A; Silva JC; Dunning Hotopp JC
    Microb Genom; 2017 Sep; 3(9):e000122. PubMed ID: 29114401
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.