216 related articles for article (PubMed ID: 32574157)
1. Somatic hypermutation analysis for improved identification of B cell clonal families from next-generation sequencing data.
Nouri N; Kleinstein SH
PLoS Comput Biol; 2020 Jun; 16(6):e1007977. PubMed ID: 32574157
[TBL] [Abstract][Full Text] [Related]
2. Optimized Threshold Inference for Partitioning of Clones From High-Throughput B Cell Repertoire Sequencing Data.
Nouri N; Kleinstein SH
Front Immunol; 2018; 9():1687. PubMed ID: 30093903
[TBL] [Abstract][Full Text] [Related]
3. A spectral clustering-based method for identifying clones from high-throughput B cell repertoire sequencing data.
Nouri N; Kleinstein SH
Bioinformatics; 2018 Jul; 34(13):i341-i349. PubMed ID: 29949968
[TBL] [Abstract][Full Text] [Related]
4. Systematic evaluation of B-cell clonal family inference approaches.
Balashova D; van Schaik BDC; Stratigopoulou M; Guikema JEJ; Caniels TG; Claireaux M; van Gils MJ; Musters A; Anang DC; de Vries N; Greiff V; van Kampen AHC
BMC Immunol; 2024 Feb; 25(1):13. PubMed ID: 38331731
[TBL] [Abstract][Full Text] [Related]
5. Fast clonal family inference from large-scale B cell repertoire sequencing data.
Wang K; Hu X; Zhang J
Cell Rep Methods; 2023 Oct; 3(10):100601. PubMed ID: 37788671
[TBL] [Abstract][Full Text] [Related]
6. A multi-objective based clustering for inferring BCR clonal lineages from high-throughput B cell repertoire data.
Abdollahi N; Jeusset L; De Septenville AL; Ripoche H; Davi F; Bernardes JS
PLoS Comput Biol; 2022 Aug; 18(8):e1010411. PubMed ID: 36037250
[TBL] [Abstract][Full Text] [Related]
7. BRILIA: Integrated Tool for High-Throughput Annotation and Lineage Tree Assembly of B-Cell Repertoires.
Lee DW; Khavrutskii IV; Wallqvist A; Bavari S; Cooper CL; Chaudhury S
Front Immunol; 2016; 7():681. PubMed ID: 28144239
[TBL] [Abstract][Full Text] [Related]
8. Capturing the differences between humoral immunity in the normal and tumor environments from repertoire-seq of B-cell receptors using supervised machine learning.
Konishi H; Komura D; Katoh H; Atsumi S; Koda H; Yamamoto A; Seto Y; Fukayama M; Yamaguchi R; Imoto S; Ishikawa S
BMC Bioinformatics; 2019 May; 20(1):267. PubMed ID: 31138102
[TBL] [Abstract][Full Text] [Related]
9. Network properties derived from deep sequencing of human B-cell receptor repertoires delineate B-cell populations.
Bashford-Rogers RJ; Palser AL; Huntly BJ; Rance R; Vassiliou GS; Follows GA; Kellam P
Genome Res; 2013 Nov; 23(11):1874-84. PubMed ID: 23742949
[TBL] [Abstract][Full Text] [Related]
10. Exploring the impact of clonal definition on B-cell diversity: implications for the analysis of immune repertoires.
Pelissier A; Luo S; Stratigopoulou M; Guikema JEJ; RodrÃguez MartÃnez M
Front Immunol; 2023; 14():1123968. PubMed ID: 37138881
[TBL] [Abstract][Full Text] [Related]
11. Identification of CVID Patients With Defects in Immune Repertoire Formation or Specification.
van Schouwenburg PA; IJspeert H; Pico-Knijnenburg I; Dalm VASH; van Hagen PM; van Zessen D; Stubbs AP; Patel SY; van der Burg M
Front Immunol; 2018; 9():2545. PubMed ID: 30532750
[TBL] [Abstract][Full Text] [Related]
12. Exploring the Diversity of the B-Cell Receptor Repertoire Through High-Throughput Sequencing.
Hom JR; Tomar D; Tipton CM
Methods Mol Biol; 2022; 2421():231-241. PubMed ID: 34870823
[TBL] [Abstract][Full Text] [Related]
13. Hierarchical Clustering Can Identify B Cell Clones with High Confidence in Ig Repertoire Sequencing Data.
Gupta NT; Adams KD; Briggs AW; Timberlake SC; Vigneault F; Kleinstein SH
J Immunol; 2017 Mar; 198(6):2489-2499. PubMed ID: 28179494
[TBL] [Abstract][Full Text] [Related]
14. Automated analysis of high-throughput B-cell sequencing data reveals a high frequency of novel immunoglobulin V gene segment alleles.
Gadala-Maria D; Yaari G; Uduman M; Kleinstein SH
Proc Natl Acad Sci U S A; 2015 Feb; 112(8):E862-70. PubMed ID: 25675496
[TBL] [Abstract][Full Text] [Related]
15. ASAP - A Webserver for Immunoglobulin-Sequencing Analysis Pipeline.
Avram O; Vaisman-Mentesh A; Yehezkel D; Ashkenazy H; Pupko T; Wine Y
Front Immunol; 2018; 9():1686. PubMed ID: 30105017
[TBL] [Abstract][Full Text] [Related]
16. The mutation patterns in B-cell immunoglobulin receptors reflect the influence of selection acting at multiple time-scales.
Yaari G; Benichou JI; Vander Heiden JA; Kleinstein SH; Louzoun Y
Philos Trans R Soc Lond B Biol Sci; 2015 Sep; 370(1676):. PubMed ID: 26194756
[TBL] [Abstract][Full Text] [Related]
17. Cutting Edge: Ig H Chains Are Sufficient to Determine Most B Cell Clonal Relationships.
Zhou JQ; Kleinstein SH
J Immunol; 2019 Oct; 203(7):1687-1692. PubMed ID: 31484734
[TBL] [Abstract][Full Text] [Related]
18. Deep sequencing of B cell receptor repertoire.
Kim D; Park D
BMB Rep; 2019 Sep; 52(9):540-547. PubMed ID: 31383253
[TBL] [Abstract][Full Text] [Related]
19. B cell variable genes have evolved their codon usage to focus the targeted patterns of somatic mutation on the complementarity determining regions.
Saini J; Hershberg U
Mol Immunol; 2015 May; 65(1):157-67. PubMed ID: 25660968
[TBL] [Abstract][Full Text] [Related]
20. Discrimination of germline V genes at different sequencing lengths and mutational burdens: A new tool for identifying and evaluating the reliability of V gene assignment.
Zhang B; Meng W; Prak ET; Hershberg U
J Immunol Methods; 2015 Dec; 427():105-16. PubMed ID: 26529062
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]