BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

246 related articles for article (PubMed ID: 32579097)

  • 1. Platon: identification and characterization of bacterial plasmid contigs in short-read draft assemblies exploiting protein sequence-based replicon distribution scores.
    Schwengers O; Barth P; Falgenhauer L; Hain T; Chakraborty T; Goesmann A
    Microb Genom; 2020 Oct; 6(10):. PubMed ID: 32579097
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Detection of plasmid contigs in draft genome assemblies using customized Kraken databases.
    Gomi R; Wyres KL; Holt KE
    Microb Genom; 2021 Apr; 7(4):. PubMed ID: 33826492
    [TBL] [Abstract][Full Text] [Related]  

  • 3. PlaScope: a targeted approach to assess the plasmidome from genome assemblies at the species level.
    Royer G; Decousser JW; Branger C; Dubois M; Médigue C; Denamur E; Vallenet D
    Microb Genom; 2018 Sep; 4(9):. PubMed ID: 30265232
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Complete Assembly of Escherichia coli Sequence Type 131 Genomes Using Long Reads Demonstrates Antibiotic Resistance Gene Variation within Diverse Plasmid and Chromosomal Contexts.
    Decano AG; Ludden C; Feltwell T; Judge K; Parkhill J; Downing T
    mSphere; 2019 May; 4(3):. PubMed ID: 31068432
    [TBL] [Abstract][Full Text] [Related]  

  • 5. PlasmidFinder and In Silico pMLST: Identification and Typing of Plasmid Replicons in Whole-Genome Sequencing (WGS).
    Carattoli A; Hasman H
    Methods Mol Biol; 2020; 2075():285-294. PubMed ID: 31584170
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Plasmer: an Accurate and Sensitive Bacterial Plasmid Prediction Tool Based on Machine Learning of Shared k-mers and Genomic Features.
    Zhu Q; Gao S; Xiao B; He Z; Hu S
    Microbiol Spectr; 2023 Jun; 11(3):e0464522. PubMed ID: 37191574
    [TBL] [Abstract][Full Text] [Related]  

  • 7. MOB-suite: software tools for clustering, reconstruction and typing of plasmids from draft assemblies.
    Robertson J; Nash JHE
    Microb Genom; 2018 Aug; 4(8):. PubMed ID: 30052170
    [TBL] [Abstract][Full Text] [Related]  

  • 8. In silico detection and typing of plasmids using PlasmidFinder and plasmid multilocus sequence typing.
    Carattoli A; Zankari E; García-Fernández A; Voldby Larsen M; Lund O; Villa L; Møller Aarestrup F; Hasman H
    Antimicrob Agents Chemother; 2014 Jul; 58(7):3895-903. PubMed ID: 24777092
    [TBL] [Abstract][Full Text] [Related]  

  • 9. RFPlasmid: predicting plasmid sequences from short-read assembly data using machine learning.
    van der Graaf-van Bloois L; Wagenaar JA; Zomer AL
    Microb Genom; 2021 Nov; 7(11):. PubMed ID: 34846288
    [TBL] [Abstract][Full Text] [Related]  

  • 10. WeFaceNano: a user-friendly pipeline for complete ONT sequence assembly and detection of antibiotic resistance in multi-plasmid bacterial isolates.
    Heikema AP; Jansen R; Hiltemann SD; Hays JP; Stubbs AP
    BMC Microbiol; 2021 Jun; 21(1):171. PubMed ID: 34098864
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Detection of extended-spectrum beta-lactamase (ESBL) genes and plasmid replicons in
    Stohr JJJM; Kluytmans-van den Bergh MFQ; Wedema R; Friedrich AW; Kluytmans JAJW; Rossen JWA
    Microb Genom; 2020 Jul; 6(7):. PubMed ID: 32589571
    [TBL] [Abstract][Full Text] [Related]  

  • 12. mlplasmids: a user-friendly tool to predict plasmid- and chromosome-derived sequences for single species.
    Arredondo-Alonso S; Rogers MRC; Braat JC; Verschuuren TD; Top J; Corander J; Willems RJL; Schürch AC
    Microb Genom; 2018 Nov; 4(11):. PubMed ID: 30383524
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Rapid, multiplexed, whole genome and plasmid sequencing of foodborne pathogens using long-read nanopore technology.
    Taylor TL; Volkening JD; DeJesus E; Simmons M; Dimitrov KM; Tillman GE; Suarez DL; Afonso CL
    Sci Rep; 2019 Nov; 9(1):16350. PubMed ID: 31704961
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Classification of bacterial plasmid and chromosome derived sequences using machine learning.
    Zou X; Nguyen M; Overbeek J; Cao B; Davis JJ
    PLoS One; 2022; 17(12):e0279280. PubMed ID: 36525447
    [TBL] [Abstract][Full Text] [Related]  

  • 15. PLASMe: a tool to identify PLASMid contigs from short-read assemblies using transformer.
    Tang X; Shang J; Ji Y; Sun Y
    Nucleic Acids Res; 2023 Aug; 51(15):e83. PubMed ID: 37427782
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Plasmid Reconstruction from Next-Gen Data: A Detailed Protocol for the Use of PLACNETw for the Reconstruction of Plasmids from WGS Datasets.
    de Toro M; Lanza VF; Vielva L; Redondo-Salvo S; de la Cruz F
    Methods Mol Biol; 2020; 2075():323-339. PubMed ID: 31584173
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Plasmid characterization in bacterial isolates of public health relevance in a tertiary healthcare facility in Kilimanjaro region, Tanzania.
    Sengeruan LP; van Zwetselaar M; Kumburu H; Aarestrup FM; Kreppel K; Sauli E; Sonda T
    J Glob Antimicrob Resist; 2022 Sep; 30():384-389. PubMed ID: 35798255
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Assessing the heterogeneity of in silico plasmid predictions based on whole-genome-sequenced clinical isolates.
    Laczny CC; Galata V; Plum A; Posch AE; Keller A
    Brief Bioinform; 2019 May; 20(3):857-865. PubMed ID: 29220507
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Multi-CAR: a tool of contig scaffolding using multiple references.
    Chen KT; Chen CJ; Shen HT; Liu CL; Huang SH; Lu CL
    BMC Bioinformatics; 2016 Dec; 17(Suppl 17):469. PubMed ID: 28155633
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Characterization of Genetic Elements Carrying
    Vu Thi Ngoc B; Le Viet T; Nguyen Thi Tuyet M; Nguyen Thi Hong T; Nguyen Thi Ngoc D; Le Van D; Chu Thi L; Tran Huy H; Penders J; Wertheim H; van Doorn HR
    Microbiol Spectr; 2022 Feb; 10(1):e0135621. PubMed ID: 35138158
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 13.