These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
3. COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project. Bergmann FT; Adams R; Moodie S; Cooper J; Glont M; Golebiewski M; Hucka M; Laibe C; Miller AK; Nickerson DP; Olivier BG; Rodriguez N; Sauro HM; Scharm M; Soiland-Reyes S; Waltemath D; Yvon F; Le Novère N BMC Bioinformatics; 2014 Dec; 15(1):369. PubMed ID: 25494900 [TBL] [Abstract][Full Text] [Related]
4. COMBINE Archive Specification Version 1. Bergmann FT; Rodriguez N; Le Novère N J Integr Bioinform; 2015 Sep; 12(2):261. PubMed ID: 26528559 [TBL] [Abstract][Full Text] [Related]
6. Specifications of standards in systems and synthetic biology: status and developments in 2021. Schreiber F; Gleeson P; Golebiewski M; Gorochowski TE; Hucka M; Keating SM; König M; Myers CJ; Nickerson DP; Sommer B; Waltemath D J Integr Bioinform; 2021 Oct; 18(3):. PubMed ID: 34674411 [TBL] [Abstract][Full Text] [Related]
7. Linking big biomedical datasets to modular analysis with Portable Encapsulated Projects. Sheffield NC; Stolarczyk M; Reuter VP; Rendeiro AF Gigascience; 2021 Dec; 10(12):. PubMed ID: 34890448 [TBL] [Abstract][Full Text] [Related]
8. Harmonizing semantic annotations for computational models in biology. Neal ML; König M; Nickerson D; Mısırlı G; Kalbasi R; Dräger A; Atalag K; Chelliah V; Cooling MT; Cook DL; Crook S; de Alba M; Friedman SH; Garny A; Gennari JH; Gleeson P; Golebiewski M; Hucka M; Juty N; Myers C; Olivier BG; Sauro HM; Scharm M; Snoep JL; Touré V; Wipat A; Wolkenhauer O; Waltemath D Brief Bioinform; 2019 Mar; 20(2):540-550. PubMed ID: 30462164 [TBL] [Abstract][Full Text] [Related]
9. Automatic Conversion of Metadata from the Study of Health in Pomerania to ODM. Hegselmann S; Gessner S; Neuhaus P; Henke J; Schmidt CO; Dugas M Stud Health Technol Inform; 2017; 236():88-96. PubMed ID: 28508783 [TBL] [Abstract][Full Text] [Related]
10. ODMedit: uniform semantic annotation for data integration in medicine based on a public metadata repository. Dugas M; Meidt A; Neuhaus P; Storck M; Varghese J BMC Med Res Methodol; 2016 Jun; 16():65. PubMed ID: 27245222 [TBL] [Abstract][Full Text] [Related]
11. Virtual patients on the semantic Web: a proof-of-application study. Dafli E; Antoniou P; Ioannidis L; Dombros N; Topps D; Bamidis PD J Med Internet Res; 2015 Jan; 17(1):e16. PubMed ID: 25616272 [TBL] [Abstract][Full Text] [Related]
12. Ontological Modelling and Execution of Phenotypic Queries in the Leipzig Health Atlas. Uciteli A; Beger C; Wagner J; Kiel A; Meineke FA; Stäubert S; Löbe M; Hänsel R; Schuster J; Kirsten T; Herre H Stud Health Technol Inform; 2021 May; 278():66-74. PubMed ID: 34042877 [TBL] [Abstract][Full Text] [Related]
13. The Semantic Data Dictionary - An Approach for Describing and Annotating Data. Rashid SM; McCusker JP; Pinheiro P; Bax MP; Santos H; Stingone JA; Das AK; McGuinness DL Data Intell; 2020; 2(4):443-486. PubMed ID: 33103120 [TBL] [Abstract][Full Text] [Related]
14. BioHackathon 2015: Semantics of data for life sciences and reproducible research. Vos RA; Katayama T; Mishima H; Kawano S; Kawashima S; Kim JD; Moriya Y; Tokimatsu T; Yamaguchi A; Yamamoto Y; Wu H; Amstutz P; Antezana E; Aoki NP; Arakawa K; Bolleman JT; Bolton E; Bonnal RJP; Bono H; Burger K; Chiba H; Cohen KB; Deutsch EW; Fernández-Breis JT; Fu G; Fujisawa T; Fukushima A; García A; Goto N; Groza T; Hercus C; Hoehndorf R; Itaya K; Juty N; Kawashima T; Kim JH; Kinjo AR; Kotera M; Kozaki K; Kumagai S; Kushida T; Lütteke T; Matsubara M; Miyamoto J; Mohsen A; Mori H; Naito Y; Nakazato T; Nguyen-Xuan J; Nishida K; Nishida N; Nishide H; Ogishima S; Ohta T; Okuda S; Paten B; Perret JL; Prathipati P; Prins P; Queralt-Rosinach N; Shinmachi D; Suzuki S; Tabata T; Takatsuki T; Taylor K; Thompson M; Uchiyama I; Vieira B; Wei CH; Wilkinson M; Yamada I; Yamanaka R; Yoshitake K; Yoshizawa AC; Dumontier M; Kosaki K; Takagi T F1000Res; 2020; 9():136. PubMed ID: 32308977 [TBL] [Abstract][Full Text] [Related]
15. Systems biology graphical notation markup language (SBGNML) version 0.3. Bergmann FT; Czauderna T; Dogrusoz U; Rougny A; Dräger A; Touré V; Mazein A; Blinov ML; Luna A J Integr Bioinform; 2020 Jun; 17(2-3):. PubMed ID: 32568733 [TBL] [Abstract][Full Text] [Related]
16. OntoStudyEdit: a new approach for ontology-based representation and management of metadata in clinical and epidemiological research. Uciteli A; Herre H J Biomed Semantics; 2015; 6():41. PubMed ID: 26688709 [TBL] [Abstract][Full Text] [Related]
17. The CAIRR Pipeline for Submitting Standards-Compliant B and T Cell Receptor Repertoire Sequencing Studies to the National Center for Biotechnology Information Repositories. Bukhari SAC; O'Connor MJ; Martínez-Romero M; Egyedi AL; Willrett D; Graybeal J; Musen MA; Rubelt F; Cheung KH; Kleinstein SH Front Immunol; 2018; 9():1877. PubMed ID: 30166985 [TBL] [Abstract][Full Text] [Related]
18. Clinical MetaData ontology: a simple classification scheme for data elements of clinical data based on semantics. Kim HH; Park YR; Lee KH; Song YS; Kim JH BMC Med Inform Decis Mak; 2019 Aug; 19(1):166. PubMed ID: 31429750 [TBL] [Abstract][Full Text] [Related]
19. An Annotation Workbench for Semantic Annotation of Data Collection Instruments. Sasse J; Fluck J Stud Health Technol Inform; 2023 May; 302():108-112. PubMed ID: 37203619 [TBL] [Abstract][Full Text] [Related]
20. TermiCron - Bridging the Gap Between FHIR Terminology Servers and Metadata Repositories. Wiedekopf J; Ulrich H; Drenkhahn C; Kock-Schoppenhauer AK; Ingenerf J Stud Health Technol Inform; 2022 Jun; 290():71-75. PubMed ID: 35672973 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]