BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

219 related articles for article (PubMed ID: 32601440)

  • 1. Quantification of translation uncovers the functions of the alternative transcriptome.
    Calviello L; Hirsekorn A; Ohler U
    Nat Struct Mol Biol; 2020 Aug; 27(8):717-725. PubMed ID: 32601440
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Genome-Wide Analysis of Actively Translated Open Reading Frames Using RiboTaper/ORFquant.
    Harnett D; Meerdink E; Calviello L; Sydow D; Ohler U
    Methods Mol Biol; 2021; 2252():331-346. PubMed ID: 33765284
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Accurate detection of short and long active ORFs using Ribo-seq data.
    Choudhary S; Li W; D Smith A
    Bioinformatics; 2020 Apr; 36(7):2053-2059. PubMed ID: 31750902
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Detecting actively translated open reading frames in ribosome profiling data.
    Calviello L; Mukherjee N; Wyler E; Zauber H; Hirsekorn A; Selbach M; Landthaler M; Obermayer B; Ohler U
    Nat Methods; 2016 Feb; 13(2):165-70. PubMed ID: 26657557
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Diversity of translation start sites may define increased complexity of the human short ORFeome.
    Oyama M; Kozuka-Hata H; Suzuki Y; Semba K; Yamamoto T; Sugano S
    Mol Cell Proteomics; 2007 Jun; 6(6):1000-6. PubMed ID: 17317662
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A survey of the complex transcriptome from the highly polyploid sugarcane genome using full-length isoform sequencing and de novo assembly from short read sequencing.
    Hoang NV; Furtado A; Mason PJ; Marquardt A; Kasirajan L; Thirugnanasambandam PP; Botha FC; Henry RJ
    BMC Genomics; 2017 May; 18(1):395. PubMed ID: 28532419
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Comparison of software packages for detecting unannotated translated small open reading frames by Ribo-seq.
    Tong G; Hah N; Martinez TF
    Brief Bioinform; 2024 May; 25(4):. PubMed ID: 38842510
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Ribosomal profiling adds new coding sequences to the proteome.
    Mumtaz MA; Couso JP
    Biochem Soc Trans; 2015 Dec; 43(6):1271-6. PubMed ID: 26614672
    [TBL] [Abstract][Full Text] [Related]  

  • 9. RiboPlotR: a visualization tool for periodic Ribo-seq reads.
    Wu HL; Hsu PY
    Plant Methods; 2021 Dec; 17(1):124. PubMed ID: 34876166
    [TBL] [Abstract][Full Text] [Related]  

  • 10. uORF-Tools-Workflow for the determination of translation-regulatory upstream open reading frames.
    Scholz A; Eggenhofer F; Gelhausen R; Grüning B; Zarnack K; Brüne B; Backofen R; Schmid T
    PLoS One; 2019; 14(9):e0222459. PubMed ID: 31513641
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Scikit-ribo Enables Accurate Estimation and Robust Modeling of Translation Dynamics at Codon Resolution.
    Fang H; Huang YF; Radhakrishnan A; Siepel A; Lyon GJ; Schatz MC
    Cell Syst; 2018 Feb; 6(2):180-191.e4. PubMed ID: 29361467
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A global survey of the transcriptome of allopolyploid Brassica napus based on single-molecule long-read isoform sequencing and Illumina-based RNA sequencing data.
    Yao S; Liang F; Gill RA; Huang J; Cheng X; Liu Y; Tong C; Liu S
    Plant J; 2020 Jul; 103(2):843-857. PubMed ID: 32270540
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Full-length transcriptome reconstruction reveals a large diversity of RNA and protein isoforms in rat hippocampus.
    Wang X; You X; Langer JD; Hou J; Rupprecht F; Vlatkovic I; Quedenau C; Tushev G; Epstein I; Schaefke B; Sun W; Fang L; Li G; Hu Y; Schuman EM; Chen W
    Nat Commun; 2019 Nov; 10(1):5009. PubMed ID: 31676752
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Allele-Selective Transcriptome Recruitment to Polysomes Primed for Translation: Protein-Coding and Noncoding RNAs, and RNA Isoforms.
    Mascarenhas R; Pietrzak M; Smith RM; Webb A; Wang D; Papp AC; Pinsonneault JK; Seweryn M; Rempala G; Sadee W
    PLoS One; 2015; 10(9):e0136798. PubMed ID: 26331722
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Isoform Evolution in Primates through Independent Combination of Alternative RNA Processing Events.
    Zhang SJ; Wang C; Yan S; Fu A; Luan X; Li Y; Sunny Shen Q; Zhong X; Chen JY; Wang X; Chin-Ming Tan B; He A; Li CY
    Mol Biol Evol; 2017 Oct; 34(10):2453-2468. PubMed ID: 28957512
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Ribosome profiling at isoform level reveals evolutionary conserved impacts of differential splicing on the proteome.
    Reixachs-Solé M; Ruiz-Orera J; Albà MM; Eyras E
    Nat Commun; 2020 Apr; 11(1):1768. PubMed ID: 32286305
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Direct detection of alternative open reading frames translation products in human significantly expands the proteome.
    Vanderperre B; Lucier JF; Bissonnette C; Motard J; Tremblay G; Vanderperre S; Wisztorski M; Salzet M; Boisvert FM; Roucou X
    PLoS One; 2013; 8(8):e70698. PubMed ID: 23950983
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Trips-Viz: an environment for the analysis of public and user-generated ribosome profiling data.
    Kiniry SJ; Judge CE; Michel AM; Baranov PV
    Nucleic Acids Res; 2021 Jul; 49(W1):W662-W670. PubMed ID: 33950201
    [TBL] [Abstract][Full Text] [Related]  

  • 19. What can Ribo-seq and proteomics tell us about the non-canonical proteome?
    Prensner JR; Abelin JG; Kok LW; Clauser KR; Mudge JM; Ruiz-Orera J; Bassani-Sternberg M; Deutsch EW; van Heesch S
    bioRxiv; 2023 May; ():. PubMed ID: 37292611
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Genome-wide characterization of differential transcript usage in Arabidopsis thaliana.
    Vaneechoutte D; Estrada AR; Lin YC; Loraine AE; Vandepoele K
    Plant J; 2017 Dec; 92(6):1218-1231. PubMed ID: 29031026
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.