These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

149 related articles for article (PubMed ID: 32604028)

  • 1. Geo-Measures: A PyMOL plugin for protein structure ensembles analysis.
    Kagami LP; das Neves GM; Timmers LFSM; Caceres RA; Eifler-Lima VL
    Comput Biol Chem; 2020 Jun; 87():107322. PubMed ID: 32604028
    [TBL] [Abstract][Full Text] [Related]  

  • 2. MDBuilder: a PyMOL plugin for the preparation of molecular dynamics simulations.
    Liu H; Jin Y; Ding H
    Brief Bioinform; 2023 Mar; 24(2):. PubMed ID: 36790845
    [TBL] [Abstract][Full Text] [Related]  

  • 3. PyVibMS: a PyMOL plugin for visualizing vibrations in molecules and solids.
    Tao Y; Zou W; Nanayakkara S; Kraka E
    J Mol Model; 2020 Sep; 26(10):290. PubMed ID: 32986131
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Molecular dynamics simulation by GROMACS using GUI plugin for PyMOL.
    Makarewicz T; Kaźmierkiewicz R
    J Chem Inf Model; 2013 May; 53(5):1229-34. PubMed ID: 23611462
    [TBL] [Abstract][Full Text] [Related]  

  • 5. MDTraj: A Modern Open Library for the Analysis of Molecular Dynamics Trajectories.
    McGibbon RT; Beauchamp KA; Harrigan MP; Klein C; Swails JM; Hernández CX; Schwantes CR; Wang LP; Lane TJ; Pande VS
    Biophys J; 2015 Oct; 109(8):1528-32. PubMed ID: 26488642
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Azahar: a PyMOL plugin for construction, visualization and analysis of glycan molecules.
    Arroyuelo A; Vila JA; Martin OA
    J Comput Aided Mol Des; 2016 Aug; 30(8):619-24. PubMed ID: 27549814
    [TBL] [Abstract][Full Text] [Related]  

  • 7. MDTRA: a molecular dynamics trajectory analyzer with a graphical user interface.
    Popov AV; Vorobjev YN; Zharkov DO
    J Comput Chem; 2013 Feb; 34(4):319-25. PubMed ID: 23047307
    [TBL] [Abstract][Full Text] [Related]  

  • 8. PoseFilter: a PyMOL plugin for filtering and analyzing small molecule docking in symmetric binding sites.
    Williams JC; Kalyaanamoorthy S
    Bioinformatics; 2021 Oct; 37(19):3367-3368. PubMed ID: 33742661
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Improvements in GROMACS plugin for PyMOL including implicit solvent simulations and displaying results of PCA analysis.
    Makarewicz T; Kaźmierkiewicz R
    J Mol Model; 2016 May; 22(5):109. PubMed ID: 27107576
    [TBL] [Abstract][Full Text] [Related]  

  • 10. LiGRO: a graphical user interface for protein-ligand molecular dynamics.
    Kagami LP; das Neves GM; da Silva AWS; Caceres RA; Kawano DF; Eifler-Lima VL
    J Mol Model; 2017 Oct; 23(11):304. PubMed ID: 28980073
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Shortcuts for faster image creation in PyMOL.
    Mooers BHM
    Protein Sci; 2020 Jan; 29(1):268-276. PubMed ID: 31710740
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Enlighten2: molecular dynamics simulations of protein-ligand systems made accessible.
    Zinovjev K; van der Kamp MW
    Bioinformatics; 2020 Dec; 36(20):5104-5106. PubMed ID: 32683443
    [TBL] [Abstract][Full Text] [Related]  

  • 13. WATsite: hydration site prediction program with PyMOL interface.
    Hu B; Lill MA
    J Comput Chem; 2014 Jun; 35(16):1255-60. PubMed ID: 24752524
    [TBL] [Abstract][Full Text] [Related]  

  • 14. RIP-MD: a tool to study residue interaction networks in protein molecular dynamics.
    Contreras-Riquelme S; Garate JA; Perez-Acle T; Martin AJM
    PeerJ; 2018; 6():e5998. PubMed ID: 30568854
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Templates for writing PyMOL scripts.
    Mooers BHM; Brown ME
    Protein Sci; 2021 Jan; 30(1):262-269. PubMed ID: 33179363
    [TBL] [Abstract][Full Text] [Related]  

  • 16. RING-PyMOL: residue interaction networks of structural ensembles and molecular dynamics.
    Del Conte A; Monzon AM; Clementel D; Camagni GF; Minervini G; Tosatto SCE; Piovesan D
    Bioinformatics; 2023 May; 39(5):. PubMed ID: 37079739
    [TBL] [Abstract][Full Text] [Related]  

  • 17. WATsite2.0 with PyMOL Plugin: Hydration Site Prediction and Visualization.
    Yang Y; Hu B; Lill MA
    Methods Mol Biol; 2017; 1611():123-134. PubMed ID: 28451976
    [TBL] [Abstract][Full Text] [Related]  

  • 18. pyGROMODS: a Python package for the generation of input files for molecular dynamic simulation with GROMACS.
    Daniyan MO
    J Biomol Struct Dyn; 2024 Sep; 42(14):7207-7220. PubMed ID: 37489036
    [TBL] [Abstract][Full Text] [Related]  

  • 19. CHAPERON
    Yekeen AA; Durojaye OA; Idris MO; Muritala HF; Arise RO
    Comput Struct Biotechnol J; 2023; 21():4849-4858. PubMed ID: 37854635
    [TBL] [Abstract][Full Text] [Related]  

  • 20. PyProtif: a PyMol plugin to retrieve and visualize protein motifs for structural studies.
    El Khoury G; Azzam W; Rebehmed J
    Amino Acids; 2023 Oct; 55(10):1429-1436. PubMed ID: 37698713
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.