108 related articles for article (PubMed ID: 32631216)
1. Diversity-guided Lamarckian random drift particle swarm optimization for flexible ligand docking.
Li C; Sun J; Palade V
BMC Bioinformatics; 2020 Jul; 21(1):286. PubMed ID: 32631216
[TBL] [Abstract][Full Text] [Related]
2. AutoDockFR: Advances in Protein-Ligand Docking with Explicitly Specified Binding Site Flexibility.
Ravindranath PA; Forli S; Goodsell DS; Olson AJ; Sanner MF
PLoS Comput Biol; 2015 Dec; 11(12):e1004586. PubMed ID: 26629955
[TBL] [Abstract][Full Text] [Related]
3. Flexible CDOCKER: Hybrid Searching Algorithm and Scoring Function with Side Chain Conformational Entropy.
Wu Y; Brooks CL
J Chem Inf Model; 2021 Nov; 61(11):5535-5549. PubMed ID: 34704754
[TBL] [Abstract][Full Text] [Related]
4. Attracting Cavities 2.0: Improving the Flexibility and Robustness for Small-Molecule Docking.
Röhrig UF; Goullieux M; Bugnon M; Zoete V
J Chem Inf Model; 2023 Jun; 63(12):3925-3940. PubMed ID: 37285197
[TBL] [Abstract][Full Text] [Related]
5. Improving protein-ligand docking results using the Semiempirical quantum mechanics: testing on the PDBbind 2016 core set.
Mohebbinia Z; Firouzi R; Karimi-Jafari MH
J Biomol Struct Dyn; 2024 Jan; ():1-11. PubMed ID: 38165642
[TBL] [Abstract][Full Text] [Related]
6. Solving Engineering Optimization Problems Based on Multi-Strategy Particle Swarm Optimization Hybrid Dandelion Optimization Algorithm.
Tang W; Cao L; Chen Y; Chen B; Yue Y
Biomimetics (Basel); 2024 May; 9(5):. PubMed ID: 38786508
[TBL] [Abstract][Full Text] [Related]
7. Effectiveness Analysis of Multiple Initial States Simulated Annealing Algorithm, a Case Study on the Molecular Docking Tool AutoDock Vina.
Zhou X; Ling M; Lin Q; Tang S; Wu J; Hu H
IEEE/ACM Trans Comput Biol Bioinform; 2023; 20(6):3830-3841. PubMed ID: 37831573
[TBL] [Abstract][Full Text] [Related]
8. S4MPLE--Sampler for Multiple Protein-Ligand Entities: Methodology and Rigid-Site Docking Benchmarking.
Hoffer L; Chira C; Marcou G; Varnek A; Horvath D
Molecules; 2015 May; 20(5):8997-9028. PubMed ID: 25996209
[TBL] [Abstract][Full Text] [Related]
9. Improved Multi-Strategy Sand Cat Swarm Optimization for Solving Global Optimization.
Zhang K; He Y; Wang Y; Sun C
Biomimetics (Basel); 2024 May; 9(5):. PubMed ID: 38786490
[TBL] [Abstract][Full Text] [Related]
10. Virtual Position Guided Strategy for Particle Swarm Optimization Algorithms on Multimodal Problems.
Li C; Sun J; Li LW; Shan M; Palade V; Wu X
Evol Comput; 2024 May; ():1-31. PubMed ID: 38776458
[TBL] [Abstract][Full Text] [Related]
11. VoteDock: consensus docking method for prediction of protein-ligand interactions.
Plewczynski D; Łaźniewski M; von Grotthuss M; Rychlewski L; Ginalski K
J Comput Chem; 2011 Mar; 32(4):568-81. PubMed ID: 20812324
[TBL] [Abstract][Full Text] [Related]
12. Handling multi-objective optimization problems with a comprehensive indicator and layered particle swarm optimizer.
Zhang X; Liu Y; Yang J; Liu J; Shu X
Math Biosci Eng; 2023 Jul; 20(8):14866-14898. PubMed ID: 37679163
[TBL] [Abstract][Full Text] [Related]
13. Gaussian Guided Self-Adaptive Wolf Search Algorithm Based on Information Entropy Theory.
Song Q; Fong S; Deb S; Hanne T
Entropy (Basel); 2018 Jan; 20(1):. PubMed ID: 33265128
[TBL] [Abstract][Full Text] [Related]
14. Two-Step Covalent Docking with Attracting Cavities.
Goullieux M; Zoete V; Röhrig UF
J Chem Inf Model; 2023 Dec; 63(24):7847-7859. PubMed ID: 38049143
[TBL] [Abstract][Full Text] [Related]
15. A New Optimized Hybridization Approach for
Jarrah A; Lababneh J
Curr Comput Aided Drug Des; 2024; 20(3):236-247. PubMed ID: 37828771
[TBL] [Abstract][Full Text] [Related]
16. A Word-Level Adversarial Attack Method Based on Sememes and an Improved Quantum-Behaved Particle Swarm Optimization.
Chen Q; Sun J; Palade V
IEEE Trans Neural Netw Learn Syst; 2023 Jun; PP():. PubMed ID: 37335783
[TBL] [Abstract][Full Text] [Related]
17. Modified Particle Swarm Optimization Algorithms for the Generation of Stable Structures of Carbon Clusters, C
Jana G; Mitra A; Pan S; Sural S; Chattaraj PK
Front Chem; 2019; 7():485. PubMed ID: 31355182
[TBL] [Abstract][Full Text] [Related]
18. A selective method for optimizing ensemble docking-based experiments on an InhA Fully-Flexible receptor model.
De Paris R; Vahl Quevedo C; Ruiz DD; Gargano F; de Souza ON
BMC Bioinformatics; 2018 Jun; 19(1):235. PubMed ID: 29929475
[TBL] [Abstract][Full Text] [Related]
19. Energy-saving optimization of the parallel chillers system based on a multi-strategy improved sparrow search algorithm.
Shao X; Yu J; Li Z; Yang X; Sundén B
Heliyon; 2023 Oct; 9(10):e21012. PubMed ID: 37916090
[TBL] [Abstract][Full Text] [Related]
20. AutoGridFR: Improvements on AutoDock Affinity Maps and Associated Software Tools.
Zhang Y; Forli S; Omelchenko A; Sanner MF
J Comput Chem; 2019 Dec; 40(32):2882-2886. PubMed ID: 31436329
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
