These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
179 related articles for article (PubMed ID: 32631445)
1. Exploring neighborhoods in large metagenome assembly graphs using spacegraphcats reveals hidden sequence diversity. Brown CT; Moritz D; O'Brien MP; Reidl F; Reiter T; Sullivan BD Genome Biol; 2020 Jul; 21(1):164. PubMed ID: 32631445 [TBL] [Abstract][Full Text] [Related]
2. MetaWRAP-a flexible pipeline for genome-resolved metagenomic data analysis. Uritskiy GV; DiRuggiero J; Taylor J Microbiome; 2018 Sep; 6(1):158. PubMed ID: 30219103 [TBL] [Abstract][Full Text] [Related]
3. Mash: fast genome and metagenome distance estimation using MinHash. Ondov BD; Treangen TJ; Melsted P; Mallonee AB; Bergman NH; Koren S; Phillippy AM Genome Biol; 2016 Jun; 17(1):132. PubMed ID: 27323842 [TBL] [Abstract][Full Text] [Related]
4. Exploring variation-aware contig graphs for (comparative) metagenomics using MaryGold. Nijkamp JF; Pop M; Reinders MJ; de Ridder D Bioinformatics; 2013 Nov; 29(22):2826-34. PubMed ID: 24058058 [TBL] [Abstract][Full Text] [Related]
13. ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data. Kieser S; Brown J; Zdobnov EM; Trajkovski M; McCue LA BMC Bioinformatics; 2020 Jun; 21(1):257. PubMed ID: 32571209 [TBL] [Abstract][Full Text] [Related]
14. GraphBin: refined binning of metagenomic contigs using assembly graphs. Mallawaarachchi V; Wickramarachchi A; Lin Y Bioinformatics; 2020 Jun; 36(11):3307-3313. PubMed ID: 32167528 [TBL] [Abstract][Full Text] [Related]
15. Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins. Muralidharan HS; Shah N; Meisel JS; Pop M Front Microbiol; 2021; 12():638561. PubMed ID: 33717033 [TBL] [Abstract][Full Text] [Related]
16. Binning_refiner: improving genome bins through the combination of different binning programs. Song WZ; Thomas T Bioinformatics; 2017 Jun; 33(12):1873-1875. PubMed ID: 28186226 [TBL] [Abstract][Full Text] [Related]
17. Accurate Binning of Metagenomic Contigs Using Composition, Coverage, and Assembly Graphs. Mallawaarachchi V; Lin Y J Comput Biol; 2022 Dec; 29(12):1357-1376. PubMed ID: 36367700 [TBL] [Abstract][Full Text] [Related]
18. CoCoNet: an efficient deep learning tool for viral metagenome binning. Arisdakessian CG; Nigro OD; Steward GF; Poisson G; Belcaid M Bioinformatics; 2021 Sep; 37(18):2803-2810. PubMed ID: 33822891 [TBL] [Abstract][Full Text] [Related]
19. Snowball: strain aware gene assembly of metagenomes. Gregor I; Schönhuth A; McHardy AC Bioinformatics; 2016 Sep; 32(17):i649-i657. PubMed ID: 27587685 [TBL] [Abstract][Full Text] [Related]
20. MEGAHIT v1.0: A fast and scalable metagenome assembler driven by advanced methodologies and community practices. Li D; Luo R; Liu CM; Leung CM; Ting HF; Sadakane K; Yamashita H; Lam TW Methods; 2016 Jun; 102():3-11. PubMed ID: 27012178 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]