These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

158 related articles for article (PubMed ID: 32657358)

  • 1. PhISCS-BnB: a fast branch and bound algorithm for the perfect tumor phylogeny reconstruction problem.
    Sadeqi Azer E; Rashidi Mehrabadi F; Malikić S; Li XC; Bartok O; Litchfield K; Levy R; Samuels Y; Schäffer AA; Gertz EM; Day CP; Pérez-Guijarro E; Marie K; Lee MP; Merlino G; Ergun F; Sahinalp SC
    Bioinformatics; 2020 Jul; 36(Suppl_1):i169-i176. PubMed ID: 32657358
    [TBL] [Abstract][Full Text] [Related]  

  • 2. PhISCS: a combinatorial approach for subperfect tumor phylogeny reconstruction via integrative use of single-cell and bulk sequencing data.
    Malikic S; Mehrabadi FR; Ciccolella S; Rahman MK; Ricketts C; Haghshenas E; Seidman D; Hach F; Hajirasouliha I; Sahinalp SC
    Genome Res; 2019 Nov; 29(11):1860-1877. PubMed ID: 31628256
    [TBL] [Abstract][Full Text] [Related]  

  • 3. RobustClone: a robust PCA method for tumor clone and evolution inference from single-cell sequencing data.
    Chen Z; Gong F; Wan L; Ma L
    Bioinformatics; 2020 Jun; 36(11):3299-3306. PubMed ID: 32159762
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Inferring cancer progression from Single-Cell Sequencing while allowing mutation losses.
    Ciccolella S; Ricketts C; Soto Gomez M; Patterson M; Silverbush D; Bonizzoni P; Hajirasouliha I; Della Vedova G
    Bioinformatics; 2021 Apr; 37(3):326-333. PubMed ID: 32805010
    [TBL] [Abstract][Full Text] [Related]  

  • 5. SPhyR: tumor phylogeny estimation from single-cell sequencing data under loss and error.
    El-Kebir M
    Bioinformatics; 2018 Sep; 34(17):i671-i679. PubMed ID: 30423070
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Summarizing the solution space in tumor phylogeny inference by multiple consensus trees.
    Aguse N; Qi Y; El-Kebir M
    Bioinformatics; 2019 Jul; 35(14):i408-i416. PubMed ID: 31510657
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Tumor heterogeneity assessed by sequencing and fluorescence in situ hybridization (FISH) data.
    Lei H; Gertz EM; Schäffer AA; Fu X; Tao Y; Heselmeyer-Haddad K; Torres I; Li G; Xu L; Hou Y; Wu K; Shi X; Dean M; Ried T; Schwartz R
    Bioinformatics; 2021 Dec; 37(24):4704-4711. PubMed ID: 34289030
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Exact Bayesian inference for phylogenetic birth-death models.
    Parag KV; Pybus OG
    Bioinformatics; 2018 Nov; 34(21):3638-3645. PubMed ID: 29718104
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A fast and memory-efficient implementation of the transfer bootstrap.
    Lutteropp S; Kozlov AM; Stamatakis A
    Bioinformatics; 2020 Apr; 36(7):2280-2281. PubMed ID: 31755898
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Tumor phylogeny inference using tree-constrained importance sampling.
    Satas G; Raphael BJ
    Bioinformatics; 2017 Jul; 33(14):i152-i160. PubMed ID: 28882002
    [TBL] [Abstract][Full Text] [Related]  

  • 11. BAli-Phy version 3: model-based co-estimation of alignment and phylogeny.
    Redelings BD
    Bioinformatics; 2021 Sep; 37(18):3032-3034. PubMed ID: 33677478
    [TBL] [Abstract][Full Text] [Related]  

  • 12. MIPUP: minimum perfect unmixed phylogenies for multi-sampled tumors via branchings and ILP.
    Husić E; Li X; Hujdurović A; Mehine M; Rizzi R; Mäkinen V; Milanič M; Tomescu AI
    Bioinformatics; 2019 Mar; 35(5):769-777. PubMed ID: 30101335
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Reconstructing tumor clonal lineage trees incorporating single-nucleotide variants, copy number alterations and structural variations.
    Fu X; Lei H; Tao Y; Schwartz R
    Bioinformatics; 2022 Jun; 38(Suppl 1):i125-i133. PubMed ID: 35758777
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Tumor Phylogeny Topology Inference via Deep Learning.
    Sadeqi Azer E; Haghir Ebrahimabadi M; Malikić S; Khardon R; Sahinalp SC
    iScience; 2020 Nov; 23(11):101655. PubMed ID: 33117968
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Effective Clustering for Single Cell Sequencing Cancer Data.
    Ciccolella S; Patterson M; Bonizzoni P; Della Vedova G
    IEEE J Biomed Health Inform; 2021 Nov; 25(11):4068-4078. PubMed ID: 34003758
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Particle Gibbs sampling for Bayesian phylogenetic inference.
    Wang S; Wang L
    Bioinformatics; 2021 May; 37(5):642-649. PubMed ID: 33045053
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Complexity and Algorithms for Finding a Perfect Phylogeny from Mixed Tumor Samples.
    Hujdurovic A; Kacar U; Milanic M; Ries B; Tomescu AI
    IEEE/ACM Trans Comput Biol Bioinform; 2018; 15(1):96-108. PubMed ID: 28113405
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Deconvolution and phylogeny inference of structural variations in tumor genomic samples.
    Eaton J; Wang J; Schwartz R
    Bioinformatics; 2018 Jul; 34(13):i357-i365. PubMed ID: 29950001
    [TBL] [Abstract][Full Text] [Related]  

  • 19. An alignment-free heuristic for fast sequence comparisons with applications to phylogeny reconstruction.
    Chockalingam SP; Pannu J; Hooshmand S; Thankachan SV; Aluru S
    BMC Bioinformatics; 2020 Nov; 21(Suppl 6):404. PubMed ID: 33203364
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Does Relaxing the Infinite Sites Assumption Give Better Tumor Phylogenies? An ILP-Based Comparative Approach.
    Bonizzoni P; Ciccolella S; Vedova GD; Soto M
    IEEE/ACM Trans Comput Biol Bioinform; 2019; 16(5):1410-1423. PubMed ID: 31603766
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.