204 related articles for article (PubMed ID: 32657362)
1. ganon: precise metagenomics classification against large and up-to-date sets of reference sequences.
Piro VC; Dadi TH; Seiler E; Reinert K; Renard BY
Bioinformatics; 2020 Jul; 36(Suppl_1):i12-i20. PubMed ID: 32657362
[TBL] [Abstract][Full Text] [Related]
2. MetaCache: context-aware classification of metagenomic reads using minhashing.
Müller A; Hundt C; Hildebrandt A; Hankeln T; Schmidt B
Bioinformatics; 2017 Dec; 33(23):3740-3748. PubMed ID: 28961782
[TBL] [Abstract][Full Text] [Related]
3. MetaBCC-LR: metagenomics binning by coverage and composition for long reads.
Wickramarachchi A; Mallawaarachchi V; Rajan V; Lin Y
Bioinformatics; 2020 Jul; 36(Suppl_1):i3-i11. PubMed ID: 32657364
[TBL] [Abstract][Full Text] [Related]
4. A space and time-efficient index for the compacted colored de Bruijn graph.
Almodaresi F; Sarkar H; Srivastava A; Patro R
Bioinformatics; 2018 Jul; 34(13):i169-i177. PubMed ID: 29949982
[TBL] [Abstract][Full Text] [Related]
5. Large-scale machine learning for metagenomics sequence classification.
Vervier K; Mahé P; Tournoud M; Veyrieras JB; Vert JP
Bioinformatics; 2016 Apr; 32(7):1023-32. PubMed ID: 26589281
[TBL] [Abstract][Full Text] [Related]
6. Fast and space-efficient taxonomic classification of long reads with hierarchical interleaved XOR filters.
Ulrich JU; Renard BY
Genome Res; 2024 Jun; ():. PubMed ID: 38886068
[TBL] [Abstract][Full Text] [Related]
7. Centrifuge: rapid and sensitive classification of metagenomic sequences.
Kim D; Song L; Breitwieser FP; Salzberg SL
Genome Res; 2016 Dec; 26(12):1721-1729. PubMed ID: 27852649
[TBL] [Abstract][Full Text] [Related]
8. SimkaMin: fast and resource frugal de novo comparative metagenomics.
Benoit G; Mariadassou M; Robin S; Schbath S; Peterlongo P; Lemaitre C
Bioinformatics; 2020 Feb; 36(4):1275-1276. PubMed ID: 31504187
[TBL] [Abstract][Full Text] [Related]
9. DREAM-Yara: an exact read mapper for very large databases with short update time.
Dadi TH; Siragusa E; Piro VC; Andrusch A; Seiler E; Renard BY; Reinert K
Bioinformatics; 2018 Sep; 34(17):i766-i772. PubMed ID: 30423080
[TBL] [Abstract][Full Text] [Related]
10. Large scale microbiome profiling in the cloud.
Valdes C; Stebliankin V; Narasimhan G
Bioinformatics; 2019 Jul; 35(14):i13-i22. PubMed ID: 31510682
[TBL] [Abstract][Full Text] [Related]
11. KCOSS: an ultra-fast k-mer counter for assembled genome analysis.
Tang D; Li Y; Tan D; Fu J; Tang Y; Lin J; Zhao R; Du H; Zhao Z
Bioinformatics; 2022 Jan; 38(4):933-940. PubMed ID: 34849595
[TBL] [Abstract][Full Text] [Related]
12. LiveKraken--real-time metagenomic classification of illumina data.
Tausch SH; Strauch B; Andrusch A; Loka TP; Lindner MS; Nitsche A; Renard BY
Bioinformatics; 2018 Nov; 34(21):3750-3752. PubMed ID: 29868852
[TBL] [Abstract][Full Text] [Related]
13. CSSSCL: a python package that uses combined sequence similarity scores for accurate taxonomic classification of long and short sequence reads.
Borozan I; Ferretti V
Bioinformatics; 2016 Feb; 32(3):453-5. PubMed ID: 26454281
[TBL] [Abstract][Full Text] [Related]
14. MetaProb: accurate metagenomic reads binning based on probabilistic sequence signatures.
Girotto S; Pizzi C; Comin M
Bioinformatics; 2016 Sep; 32(17):i567-i575. PubMed ID: 27587676
[TBL] [Abstract][Full Text] [Related]
15. MMseqs software suite for fast and deep clustering and searching of large protein sequence sets.
Hauser M; Steinegger M; Söding J
Bioinformatics; 2016 May; 32(9):1323-30. PubMed ID: 26743509
[TBL] [Abstract][Full Text] [Related]
16. A novel data structure to support ultra-fast taxonomic classification of metagenomic sequences with k-mer signatures.
Liu X; Yu Y; Liu J; Elliott CF; Qian C; Liu J
Bioinformatics; 2018 Jan; 34(1):171-178. PubMed ID: 29036588
[TBL] [Abstract][Full Text] [Related]
17. Fast detection of maximal exact matches via fixed sampling of query K-mers and Bloom filtering of index K-mers.
Liu Y; Zhang LY; Li J
Bioinformatics; 2019 Nov; 35(22):4560-4567. PubMed ID: 30994891
[TBL] [Abstract][Full Text] [Related]
18. Higher-order Markov models for metagenomic sequence classification.
Burks DJ; Azad RK
Bioinformatics; 2020 Aug; 36(14):4130-4136. PubMed ID: 32516355
[TBL] [Abstract][Full Text] [Related]
19. Compact and evenly distributed k-mer binning for genomic sequences.
Nyström-Persson J; Keeble-Gagnère G; Zawad N
Bioinformatics; 2021 Sep; 37(17):2563-2569. PubMed ID: 33693556
[TBL] [Abstract][Full Text] [Related]
20. CMash: fast, multi-resolution estimation of k-mer-based Jaccard and containment indices.
Liu S; Koslicki D
Bioinformatics; 2022 Jun; 38(Suppl 1):i28-i35. PubMed ID: 35758788
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
