These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

226 related articles for article (PubMed ID: 32657364)

  • 1. MetaBCC-LR: metagenomics binning by coverage and composition for long reads.
    Wickramarachchi A; Mallawaarachchi V; Rajan V; Lin Y
    Bioinformatics; 2020 Jul; 36(Suppl_1):i3-i11. PubMed ID: 32657364
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Binning long reads in metagenomics datasets using composition and coverage information.
    Wickramarachchi A; Lin Y
    Algorithms Mol Biol; 2022 Jul; 17(1):14. PubMed ID: 35821155
    [TBL] [Abstract][Full Text] [Related]  

  • 3. GraphBin: refined binning of metagenomic contigs using assembly graphs.
    Mallawaarachchi V; Wickramarachchi A; Lin Y
    Bioinformatics; 2020 Jun; 36(11):3307-3313. PubMed ID: 32167528
    [TBL] [Abstract][Full Text] [Related]  

  • 4. MetaProb: accurate metagenomic reads binning based on probabilistic sequence signatures.
    Girotto S; Pizzi C; Comin M
    Bioinformatics; 2016 Sep; 32(17):i567-i575. PubMed ID: 27587676
    [TBL] [Abstract][Full Text] [Related]  

  • 5. MEGAN-LR: new algorithms allow accurate binning and easy interactive exploration of metagenomic long reads and contigs.
    Huson DH; Albrecht B; Bağcı C; Bessarab I; Górska A; Jolic D; Williams RBH
    Biol Direct; 2018 Apr; 13(1):6. PubMed ID: 29678199
    [TBL] [Abstract][Full Text] [Related]  

  • 6. CoCoNet: an efficient deep learning tool for viral metagenome binning.
    Arisdakessian CG; Nigro OD; Steward GF; Poisson G; Belcaid M
    Bioinformatics; 2021 Sep; 37(18):2803-2810. PubMed ID: 33822891
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Large-scale machine learning for metagenomics sequence classification.
    Vervier K; Mahé P; Tournoud M; Veyrieras JB; Vert JP
    Bioinformatics; 2016 Apr; 32(7):1023-32. PubMed ID: 26589281
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Improving the sensitivity of long read overlap detection using grouped short k-mer matches.
    Du N; Chen J; Sun Y
    BMC Genomics; 2019 Apr; 20(Suppl 2):190. PubMed ID: 30967123
    [TBL] [Abstract][Full Text] [Related]  

  • 9. AFITbin: a metagenomic contig binning method using aggregate l-mer frequency based on initial and terminal nucleotides.
    Darabi A; Sobhani S; Aghdam R; Eslahchi C
    BMC Bioinformatics; 2024 Jul; 25(1):241. PubMed ID: 39014300
    [TBL] [Abstract][Full Text] [Related]  

  • 10. COCACOLA: binning metagenomic contigs using sequence COmposition, read CoverAge, CO-alignment and paired-end read LinkAge.
    Lu YY; Chen T; Fuhrman JA; Sun F
    Bioinformatics; 2017 Mar; 33(6):791-798. PubMed ID: 27256312
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Improving contig binning of metagenomic data using [Formula: see text] oligonucleotide frequency dissimilarity.
    Wang Y; Wang K; Lu YY; Sun F
    BMC Bioinformatics; 2017 Sep; 18(1):425. PubMed ID: 28931373
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Accurate Binning of Metagenomic Contigs Using Composition, Coverage, and Assembly Graphs.
    Mallawaarachchi V; Lin Y
    J Comput Biol; 2022 Dec; 29(12):1357-1376. PubMed ID: 36367700
    [TBL] [Abstract][Full Text] [Related]  

  • 13. OGRE: Overlap Graph-based metagenomic Read clustEring.
    Balvert M; Luo X; Hauptfeld E; Schönhuth A; Dutilh BE
    Bioinformatics; 2021 May; 37(7):905-912. PubMed ID: 32871010
    [TBL] [Abstract][Full Text] [Related]  

  • 14. BMC3C: binning metagenomic contigs using codon usage, sequence composition and read coverage.
    Yu G; Jiang Y; Wang J; Zhang H; Luo H
    Bioinformatics; 2018 Dec; 34(24):4172-4179. PubMed ID: 29947757
    [TBL] [Abstract][Full Text] [Related]  

  • 15. MetaCluster-TA: taxonomic annotation for metagenomic data based on assembly-assisted binning.
    Wang Y; Leung H; Yiu S; Chin F
    BMC Genomics; 2014; 15 Suppl 1(Suppl 1):S12. PubMed ID: 24564377
    [TBL] [Abstract][Full Text] [Related]  

  • 16. CH-Bin: A convex hull based approach for binning metagenomic contigs.
    Chandrasiri S; Perera T; Dilhara A; Perera I; Mallawaarachchi V
    Comput Biol Chem; 2022 Oct; 100():107734. PubMed ID: 35964419
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Metagenomic binning through low-density hashing.
    Luo Y; Yu YW; Zeng J; Berger B; Peng J
    Bioinformatics; 2019 Jan; 35(2):219-226. PubMed ID: 30010790
    [TBL] [Abstract][Full Text] [Related]  

  • 18. MBBC: an efficient approach for metagenomic binning based on clustering.
    Wang Y; Hu H; Li X
    BMC Bioinformatics; 2015 Feb; 16():36. PubMed ID: 25652152
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Metagenomic binning with assembly graph embeddings.
    Lamurias A; Sereika M; Albertsen M; Hose K; Nielsen TD
    Bioinformatics; 2022 Sep; 38(19):4481-4487. PubMed ID: 35972375
    [TBL] [Abstract][Full Text] [Related]  

  • 20. SemiBin2: self-supervised contrastive learning leads to better MAGs for short- and long-read sequencing.
    Pan S; Zhao XM; Coelho LP
    Bioinformatics; 2023 Jun; 39(39 Suppl 1):i21-i29. PubMed ID: 37387171
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.