BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

318 related articles for article (PubMed ID: 32674515)

  • 1. Validation of Variant Assembly Using HAPHPIPE with Next-Generation Sequence Data from Viruses.
    Gibson KM; Steiner MC; Rentia U; Bendall ML; Pérez-Losada M; Crandall KA
    Viruses; 2020 Jul; 12(7):. PubMed ID: 32674515
    [TBL] [Abstract][Full Text] [Related]  

  • 2. HAPHPIPE: Haplotype Reconstruction and Phylodynamics for Deep Sequencing of Intrahost Viral Populations.
    Bendall ML; Gibson KM; Steiner MC; Rentia U; Pérez-Losada M; Crandall KA
    Mol Biol Evol; 2021 Apr; 38(4):1677-1690. PubMed ID: 33367849
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Evaluation of haplotype callers for next-generation sequencing of viruses.
    Eliseev A; Gibson KM; Avdeyev P; Novik D; Bendall ML; Pérez-Losada M; Alexeev N; Crandall KA
    Infect Genet Evol; 2020 Aug; 82():104277. PubMed ID: 32151775
    [TBL] [Abstract][Full Text] [Related]  

  • 4. An online coronavirus analysis platform from the National Genomics Data Center.
    Gong Z; Zhu JW; Li CP; Jiang S; Ma LN; Tang BX; Zou D; Chen ML; Sun YB; Song SH; Zhang Z; Xiao JF; Xue YB; Bao YM; Du ZL; Zhao WM
    Zool Res; 2020 Nov; 41(6):705-708. PubMed ID: 33045776
    [TBL] [Abstract][Full Text] [Related]  

  • 5. VPipe: an Automated Bioinformatics Platform for Assembly and Management of Viral Next-Generation Sequencing Data.
    Wagner DD; Marine RL; Ramos E; Ng TFF; Castro CJ; Okomo-Adhiambo M; Harvey K; Doho G; Kelly R; Jain Y; Tatusov RL; Silva H; Rota PA; Khan AN; Oberste MS
    Microbiol Spectr; 2022 Apr; 10(2):e0256421. PubMed ID: 35234489
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Benchmarking and Assessment of Eight
    Gupta AK; Kumar M
    OMICS; 2022 Jul; 26(7):372-381. PubMed ID: 35759429
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Rapid screening and identification of viral pathogens in metagenomic data.
    Song S; Ma L; Xu X; Shi H; Li X; Liu Y; Hao P
    BMC Med Genomics; 2021 Dec; 14(Suppl 6):289. PubMed ID: 34903237
    [TBL] [Abstract][Full Text] [Related]  

  • 8. ViPRA-Haplo: De Novo Reconstruction of Viral Populations Using Paired End Sequencing Data.
    Li W; Malhotra R; Wu S; Jha M; Rodrigo A; Poss M; Acharya R
    IEEE/ACM Trans Comput Biol Bioinform; 2024; 21(3):492-500. PubMed ID: 38451771
    [TBL] [Abstract][Full Text] [Related]  

  • 9. SARS-CoV-2 exhibits intra-host genomic plasticity and low-frequency polymorphic quasispecies.
    Karamitros T; Papadopoulou G; Bousali M; Mexias A; Tsiodras S; Mentis A
    J Clin Virol; 2020 Oct; 131():104585. PubMed ID: 32818852
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Viral deep sequencing needs an adaptive approach: IRMA, the iterative refinement meta-assembler.
    Shepard SS; Meno S; Bahl J; Wilson MM; Barnes J; Neuhaus E
    BMC Genomics; 2016 Sep; 17(1):708. PubMed ID: 27595578
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Bioinformatic data processing pipelines in support of next-generation sequencing-based HIV drug resistance testing: the Winnipeg Consensus.
    Ji H; Enns E; Brumme CJ; Parkin N; Howison M; Lee ER; Capina R; Marinier E; Avila-Rios S; Sandstrom P; Van Domselaar G; Harrigan R; Paredes R; Kantor R; Noguera-Julian M
    J Int AIDS Soc; 2018 Oct; 21(10):e25193. PubMed ID: 30350345
    [TBL] [Abstract][Full Text] [Related]  

  • 12. SARS-CoV-2 will constantly sweep its tracks: a vaccine containing CpG motifs in 'lasso' for the multi-faced virus.
    Oberemok VV; Laikova KV; Yurchenko KA; Marochkin NA; Fomochkina II; Kubyshkin AV
    Inflamm Res; 2020 Sep; 69(9):801-812. PubMed ID: 32656668
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A penalized regression approach to haplotype reconstruction of viral populations arising in early HIV/SIV infection.
    Leviyang S; Griva I; Ita S; Johnson WE
    Bioinformatics; 2017 Aug; 33(16):2455-2463. PubMed ID: 28379346
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Coronavirus discovery by metagenomic sequencing: a tool for pandemic preparedness.
    Carbo EC; Sidorov IA; Zevenhoven-Dobbe JC; Snijder EJ; Claas EC; Laros JFJ; Kroes ACM; de Vries JJC
    J Clin Virol; 2020 Oct; 131():104594. PubMed ID: 32866812
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Amplicon-Based Detection and Sequencing of SARS-CoV-2 in Nasopharyngeal Swabs from Patients With COVID-19 and Identification of Deletions in the Viral Genome That Encode Proteins Involved in Interferon Antagonism.
    Moore SC; Penrice-Randal R; Alruwaili M; Randle N; Armstrong S; Hartley C; Haldenby S; Dong X; Alrezaihi A; Almsaud M; Bentley E; Clark J; García-Dorival I; Gilmore P; Han X; Jones B; Luu L; Sharma P; Shawli G; Sun Y; Zhao Q; Pullan ST; Carter DP; Bewley K; Dunning J; Zhou EM; Solomon T; Beadsworth M; Cruise J; Crook DW; Matthews DA; Davidson AD; Mahmood Z; Aljabr W; Druce J; Vipond R; Ng L; Renia L; Openshaw PJM; Baillie JK; Carroll MW; Stewart J; Darby A; Semple M; Turtle L; Hiscox JA
    Viruses; 2020 Oct; 12(10):. PubMed ID: 33066701
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Quasispecies Analysis of SARS-CoV-2 of 15 Different Lineages during the First Year of the Pandemic Prompts Scratching under the Surface of Consensus Genome Sequences.
    Bader W; Delerce J; Aherfi S; La Scola B; Colson P
    Int J Mol Sci; 2022 Dec; 23(24):. PubMed ID: 36555300
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Strainline: full-length de novo viral haplotype reconstruction from noisy long reads.
    Luo X; Kang X; Schönhuth A
    Genome Biol; 2022 Jan; 23(1):29. PubMed ID: 35057847
    [TBL] [Abstract][Full Text] [Related]  

  • 18. CoV-Seq, a New Tool for SARS-CoV-2 Genome Analysis and Visualization: Development and Usability Study.
    Liu B; Liu K; Zhang H; Zhang L; Bian Y; Huang L
    J Med Internet Res; 2020 Oct; 22(10):e22299. PubMed ID: 32931441
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Whole Genome Sequencing of SARS-CoV-2: Adapting Illumina Protocols for Quick and Accurate Outbreak Investigation during a Pandemic.
    Pillay S; Giandhari J; Tegally H; Wilkinson E; Chimukangara B; Lessells R; Moosa Y; Mattison S; Gazy I; Fish M; Singh L; Khanyile KS; San JE; Fonseca V; Giovanetti M; Alcantara LC; de Oliveira T
    Genes (Basel); 2020 Aug; 11(8):. PubMed ID: 32824573
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Evolution of viral quasispecies during SARS-CoV-2 infection.
    Jary A; Leducq V; Malet I; Marot S; Klement-Frutos E; Teyssou E; Soulié C; Abdi B; Wirden M; Pourcher V; Caumes E; Calvez V; Burrel S; Marcelin AG; Boutolleau D
    Clin Microbiol Infect; 2020 Nov; 26(11):1560.e1-1560.e4. PubMed ID: 32717416
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 16.