434 related articles for article (PubMed ID: 32689929)
1. Performance evaluation of lossy quality compression algorithms for RNA-seq data.
Yu R; Yang W; Wang S
BMC Bioinformatics; 2020 Jul; 21(1):321. PubMed ID: 32689929
[TBL] [Abstract][Full Text] [Related]
2. A Two-Level Scheme for Quality Score Compression.
Voges J; Fotouhi A; Ostermann J; Külekci MO
J Comput Biol; 2018 Oct; 25(10):1141-1151. PubMed ID: 30059248
[TBL] [Abstract][Full Text] [Related]
3. smallWig: parallel compression of RNA-seq WIG files.
Wang Z; Weissman T; Milenkovic O
Bioinformatics; 2016 Jan; 32(2):173-80. PubMed ID: 26424856
[TBL] [Abstract][Full Text] [Related]
4. CROMqs: An infinitesimal successive refinement lossy compressor for the quality scores.
No A; Hernaez M; Ochoa I
J Bioinform Comput Biol; 2020 Dec; 18(6):2050031. PubMed ID: 32938284
[TBL] [Abstract][Full Text] [Related]
5. Effect of lossy compression of quality scores on variant calling.
Ochoa I; Hernaez M; Goldfeder R; Weissman T; Ashley E
Brief Bioinform; 2017 Mar; 18(2):183-194. PubMed ID: 26966283
[TBL] [Abstract][Full Text] [Related]
6. NGC: lossless and lossy compression of aligned high-throughput sequencing data.
Popitsch N; von Haeseler A
Nucleic Acids Res; 2013 Jan; 41(1):e27. PubMed ID: 23066097
[TBL] [Abstract][Full Text] [Related]
7. FaStore: a space-saving solution for raw sequencing data.
Roguski L; Ochoa I; Hernaez M; Deorowicz S
Bioinformatics; 2018 Aug; 34(16):2748-2756. PubMed ID: 29617939
[TBL] [Abstract][Full Text] [Related]
8. CALQ: compression of quality values of aligned sequencing data.
Voges J; Ostermann J; Hernaez M
Bioinformatics; 2018 May; 34(10):1650-1658. PubMed ID: 29186284
[TBL] [Abstract][Full Text] [Related]
9. Lossy compression of quality scores in genomic data.
Cánovas R; Moffat A; Turpin A
Bioinformatics; 2014 Aug; 30(15):2130-6. PubMed ID: 24728856
[TBL] [Abstract][Full Text] [Related]
10. QualComp: a new lossy compressor for quality scores based on rate distortion theory.
Ochoa I; Asnani H; Bharadia D; Chowdhury M; Weissman T; Yona G
BMC Bioinformatics; 2013 Jun; 14():187. PubMed ID: 23758828
[TBL] [Abstract][Full Text] [Related]
11. QVZ: lossy compression of quality values.
Malysa G; Hernaez M; Ochoa I; Rao M; Ganesan K; Weissman T
Bioinformatics; 2015 Oct; 31(19):3122-9. PubMed ID: 26026138
[TBL] [Abstract][Full Text] [Related]
12. Lossy Compression of Quality Values in Sequencing Data.
Morales VS; Houghten S
IEEE/ACM Trans Comput Biol Bioinform; 2021; 18(5):1958-1969. PubMed ID: 31869798
[TBL] [Abstract][Full Text] [Related]
13. ScaleQC: a scalable lossy to lossless solution for NGS data compression.
Yu R; Yang W
Bioinformatics; 2020 Nov; 36(17):4551-4559. PubMed ID: 32458976
[TBL] [Abstract][Full Text] [Related]
14. mspack: efficient lossless and lossy mass spectrometry data compression.
Hanau F; Röst H; Ochoa I
Bioinformatics; 2021 Nov; 37(21):3923-3925. PubMed ID: 34478503
[TBL] [Abstract][Full Text] [Related]
15. QuickRNASeq lifts large-scale RNA-seq data analyses to the next level of automation and interactive visualization.
Zhao S; Xi L; Quan J; Xi H; Zhang Y; von Schack D; Vincent M; Zhang B
BMC Genomics; 2016 Jan; 17():39. PubMed ID: 26747388
[TBL] [Abstract][Full Text] [Related]
16. Single-Cell RNA Sequencing Analysis: A Step-by-Step Overview.
Slovin S; Carissimo A; Panariello F; Grimaldi A; Bouché V; Gambardella G; Cacchiarelli D
Methods Mol Biol; 2021; 2284():343-365. PubMed ID: 33835452
[TBL] [Abstract][Full Text] [Related]
17. AQUa: an adaptive framework for compression of sequencing quality scores with random access functionality.
Paridaens T; Van Wallendael G; De Neve W; Lambert P
Bioinformatics; 2018 Feb; 34(3):425-433. PubMed ID: 29028894
[TBL] [Abstract][Full Text] [Related]
18. KungFQ: a simple and powerful approach to compress fastq files.
Grassi E; Di Gregorio F; Molineris I
IEEE/ACM Trans Comput Biol Bioinform; 2012; 9(6):1837-42. PubMed ID: 23221092
[TBL] [Abstract][Full Text] [Related]
19. ChIPWig: a random access-enabling lossless and lossy compression method for ChIP-seq data.
Ravanmehr V; Kim M; Wang Z; Milenkovic O
Bioinformatics; 2018 Mar; 34(6):911-919. PubMed ID: 29087447
[TBL] [Abstract][Full Text] [Related]
20. Better quality score compression through sequence-based quality smoothing.
Shibuya Y; Comin M
BMC Bioinformatics; 2019 Nov; 20(Suppl 9):302. PubMed ID: 31757199
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
