These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

200 related articles for article (PubMed ID: 32692823)

  • 1. Phylogeny Estimation Given Sequence Length Heterogeneity.
    Smirnov V; Warnow T
    Syst Biol; 2021 Feb; 70(2):268-282. PubMed ID: 32692823
    [TBL] [Abstract][Full Text] [Related]  

  • 2. RAxML and FastTree: comparing two methods for large-scale maximum likelihood phylogeny estimation.
    Liu K; Linder CR; Warnow T
    PLoS One; 2011; 6(11):e27731. PubMed ID: 22132132
    [TBL] [Abstract][Full Text] [Related]  

  • 3. MAGUS+eHMMs: improved multiple sequence alignment accuracy for fragmentary sequences.
    Shen C; Zaharias P; Warnow T
    Bioinformatics; 2022 Jan; 38(4):918-924. PubMed ID: 34791036
    [TBL] [Abstract][Full Text] [Related]  

  • 4. UPP2: fast and accurate alignment of datasets with fragmentary sequences.
    Park M; Ivanovic S; Chu G; Shen C; Warnow T
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36625535
    [TBL] [Abstract][Full Text] [Related]  

  • 5. SEPP: SATé-enabled phylogenetic placement.
    Mirarab S; Nguyen N; Warnow T
    Pac Symp Biocomput; 2012; ():247-58. PubMed ID: 22174280
    [TBL] [Abstract][Full Text] [Related]  

  • 6. SATe-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees.
    Liu K; Warnow TJ; Holder MT; Nelesen SM; Yu J; Stamatakis AP; Linder CR
    Syst Biol; 2012 Jan; 61(1):90-106. PubMed ID: 22139466
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Ultra-large alignments using phylogeny-aware profiles.
    Nguyen NP; Mirarab S; Kumar K; Warnow T
    Genome Biol; 2015 Jun; 16(1):124. PubMed ID: 26076734
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Using Constrained-INC for Large-Scale Gene Tree and Species Tree Estimation.
    Le T; Sy A; Molloy EK; Zhang Q; Rao S; Warnow T
    IEEE/ACM Trans Comput Biol Bioinform; 2021; 18(1):2-15. PubMed ID: 32750844
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Using ESTs for phylogenomics: can one accurately infer a phylogenetic tree from a gappy alignment?
    Hartmann S; Vision TJ
    BMC Evol Biol; 2008 Mar; 8():95. PubMed ID: 18366758
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Multiple Sequence Alignment for Large Heterogeneous Datasets Using SATé, PASTA, and UPP.
    Warnow T; Mirarab S
    Methods Mol Biol; 2021; 2231():99-119. PubMed ID: 33289889
    [TBL] [Abstract][Full Text] [Related]  

  • 11. DACTAL: divide-and-conquer trees (almost) without alignments.
    Nelesen S; Liu K; Wang LS; Linder CR; Warnow T
    Bioinformatics; 2012 Jun; 28(12):i274-82. PubMed ID: 22689772
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Ancestral sequence alignment under optimal conditions.
    Hudek AK; Brown DG
    BMC Bioinformatics; 2005 Nov; 6():273. PubMed ID: 16293191
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Effects of nucleotide sequence alignment on phylogeny estimation: a case study of 18S rDNAs of apicomplexa.
    Morrison DA; Ellis JT
    Mol Biol Evol; 1997 Apr; 14(4):428-41. PubMed ID: 9100373
    [TBL] [Abstract][Full Text] [Related]  

  • 14. On the quality of tree-based protein classification.
    Lazareva-Ulitsky B; Diemer K; Thomas PD
    Bioinformatics; 2005 May; 21(9):1876-90. PubMed ID: 15647305
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Recent progress on methods for estimating and updating large phylogenies.
    Zaharias P; Warnow T
    Philos Trans R Soc Lond B Biol Sci; 2022 Oct; 377(1861):20210244. PubMed ID: 35989607
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Treelength optimization for phylogeny estimation.
    Liu K; Warnow T
    PLoS One; 2012; 7(3):e33104. PubMed ID: 22442677
    [TBL] [Abstract][Full Text] [Related]  

  • 17. WITCH: Improved Multiple Sequence Alignment Through Weighted Consensus Hidden Markov Model Alignment.
    Shen C; Park M; Warnow T
    J Comput Biol; 2022 Aug; 29(8):782-801. PubMed ID: 35575747
    [No Abstract]   [Full Text] [Related]  

  • 18. To Include or Not to Include: The Impact of Gene Filtering on Species Tree Estimation Methods.
    Molloy EK; Warnow T
    Syst Biol; 2018 Mar; 67(2):285-303. PubMed ID: 29029338
    [TBL] [Abstract][Full Text] [Related]  

  • 19. The effect of the guide tree on multiple sequence alignments and subsequent phylogenetic analyses.
    Nelesen S; Liu K; Zhao D; Linder CR; Warnow T
    Pac Symp Biocomput; 2008; ():25-36. PubMed ID: 18229674
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Phylogenetic Tree Estimation With and Without Alignment: New Distance Methods and Benchmarking.
    Bogusz M; Whelan S
    Syst Biol; 2017 Mar; 66(2):218-231. PubMed ID: 27633353
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.