These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
154 related articles for article (PubMed ID: 32703258)
21. Genome sequence assembly algorithms and misassembly identification methods. Meng Y; Lei Y; Gao J; Liu Y; Ma E; Ding Y; Bian Y; Zu H; Dong Y; Zhu X Mol Biol Rep; 2022 Nov; 49(11):11133-11148. PubMed ID: 36151399 [TBL] [Abstract][Full Text] [Related]
22. METAMVGL: a multi-view graph-based metagenomic contig binning algorithm by integrating assembly and paired-end graphs. Zhang Z; Zhang L BMC Bioinformatics; 2021 Jul; 22(Suppl 10):378. PubMed ID: 34294039 [TBL] [Abstract][Full Text] [Related]
23. VeChat: correcting errors in long reads using variation graphs. Luo X; Kang X; Schönhuth A Nat Commun; 2022 Nov; 13(1):6657. PubMed ID: 36333324 [TBL] [Abstract][Full Text] [Related]
24. Read mapping on de Bruijn graphs. Limasset A; Cazaux B; Rivals E; Peterlongo P BMC Bioinformatics; 2016 Jun; 17(1):237. PubMed ID: 27306641 [TBL] [Abstract][Full Text] [Related]
25. Accurate extension of multiple sequence alignments using a phylogeny-aware graph algorithm. Löytynoja A; Vilella AJ; Goldman N Bioinformatics; 2012 Jul; 28(13):1684-91. PubMed ID: 22531217 [TBL] [Abstract][Full Text] [Related]
26. Illumina error correction near highly repetitive DNA regions improves de novo genome assembly. Heydari M; Miclotte G; Van de Peer Y; Fostier J BMC Bioinformatics; 2019 Jun; 20(1):298. PubMed ID: 31159722 [TBL] [Abstract][Full Text] [Related]
27. Haplotype phasing by multi-assembly of shared haplotypes: phase-dependent interactions between rare variants. Halldórsson BV; Aguiar D; Istrail S Pac Symp Biocomput; 2011; ():88-99. PubMed ID: 21121036 [TBL] [Abstract][Full Text] [Related]
29. AliWABA: alignment on the web through an A-Bruijn approach. Jones NC; Zhi D; Raphael BJ Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W613-6. PubMed ID: 16845083 [TBL] [Abstract][Full Text] [Related]
31. Benchmarking long-read genome sequence alignment tools for human genomics applications. LoTempio J; Delot E; Vilain E PeerJ; 2023; 11():e16515. PubMed ID: 38130927 [TBL] [Abstract][Full Text] [Related]
32. Integrating long-range connectivity information into de Bruijn graphs. Turner I; Garimella KV; Iqbal Z; McVean G Bioinformatics; 2018 Aug; 34(15):2556-2565. PubMed ID: 29554215 [TBL] [Abstract][Full Text] [Related]
33. cPlot: Contig-Plotting Visualization for the Analysis of Short-Read Nucleotide Sequence Alignments. Ji M; Kan Y; Kim D; Jung J; Yi G Int J Mol Sci; 2022 Sep; 23(19):. PubMed ID: 36232783 [TBL] [Abstract][Full Text] [Related]
34. Coverage-preserving sparsification of overlap graphs for long-read assembly. Jain C Bioinformatics; 2023 Mar; 39(3):. PubMed ID: 36892439 [TBL] [Abstract][Full Text] [Related]
35. Evaluation of short read metagenomic assembly. Charuvaka A; Rangwala H BMC Genomics; 2011; 12 Suppl 2(Suppl 2):S8. PubMed ID: 21989307 [TBL] [Abstract][Full Text] [Related]
36. Lerna: transformer architectures for configuring error correction tools for short- and long-read genome sequencing. Sharma A; Jain P; Mahgoub A; Zhou Z; Mahadik K; Chaterji S BMC Bioinformatics; 2022 Jan; 23(1):25. PubMed ID: 34991450 [TBL] [Abstract][Full Text] [Related]