BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

229 related articles for article (PubMed ID: 32712918)

  • 1. Inverse RNA Folding Workflow to Design and Test Ribozymes that Include Pseudoknots.
    Kayedkhordeh M; Yamagami R; Bevilacqua PC; Mathews DH
    Methods Mol Biol; 2021; 2167():113-143. PubMed ID: 32712918
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Computer-Aided Design of Active Pseudoknotted Hammerhead Ribozymes.
    Najeh S; Zandi K; Djerroud S; Kharma N; Perreault J
    Methods Mol Biol; 2021; 2167():91-111. PubMed ID: 32712917
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Design of highly active double-pseudoknotted ribozymes: a combined computational and experimental study.
    Yamagami R; Kayedkhordeh M; Mathews DH; Bevilacqua PC
    Nucleic Acids Res; 2019 Jan; 47(1):29-42. PubMed ID: 30462314
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A pseudoknot ribozyme structure is active in vivo and required for hepatitis delta virus RNA replication.
    Jeng KS; Daniel A; Lai MM
    J Virol; 1996 Apr; 70(4):2403-10. PubMed ID: 8642668
    [TBL] [Abstract][Full Text] [Related]  

  • 5. The folding pathway of the genomic hepatitis delta virus ribozyme is dominated by slow folding of the pseudoknots.
    Chadalavada DM; Senchak SE; Bevilacqua PC
    J Mol Biol; 2002 Apr; 317(4):559-75. PubMed ID: 11955009
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A nested double pseudoknot is required for self-cleavage activity of both the genomic and antigenomic hepatitis delta virus ribozymes.
    Wadkins TS; Perrotta AT; Ferré-D'Amaré AR; Doudna JA; Been MD
    RNA; 1999 Jun; 5(6):720-7. PubMed ID: 10376872
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Effects of flanking regions on HDV cotranscriptional folding kinetics.
    Wang Y; Wang Z; Liu T; Gong S; Zhang W
    RNA; 2018 Sep; 24(9):1229-1240. PubMed ID: 29954950
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Antigenomic Hepatitis delta virus ribozymes self-cleave in 18 M formamide.
    Smith JB; Dinter-Gottlieb G
    Nucleic Acids Res; 1991 Mar; 19(6):1285-9. PubMed ID: 1709487
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Developing three-dimensional models of putative-folding intermediates of the HDV ribozyme.
    Reymond C; Lévesque D; Bisaillon M; Perreault JP
    Structure; 2010 Dec; 18(12):1608-16. PubMed ID: 21134640
    [TBL] [Abstract][Full Text] [Related]  

  • 10. In vitro selection analysis of trans-acting HDV ribozyme.
    Nishikawa F; Chiba A; Shirai M; Fauzi H; Taira K; Kumar PK; Nishikawa S
    Nucleic Acids Symp Ser; 1995; (34):115-6. PubMed ID: 8841579
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Activation of PKR by RNA misfolding: HDV ribozyme dimers activate PKR.
    Heinicke LA; Bevilacqua PC
    RNA; 2012 Dec; 18(12):2157-65. PubMed ID: 23105000
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Computational design and experimental verification of pseudoknotted ribozymes.
    Najeh S; Zandi K; Kharma N; Perreault J
    RNA; 2023 Jun; 29(6):764-776. PubMed ID: 36868786
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A three-dimensional model of hepatitis delta virus ribozyme based on biochemical and mutational analyses.
    Tanner NK; Schaff S; Thill G; Petit-Koskas E; Crain-Denoyelle AM; Westhof E
    Curr Biol; 1994 Jun; 4(6):488-98. PubMed ID: 7922369
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A mechanistic framework for co-transcriptional folding of the HDV genomic ribozyme in the presence of downstream sequence.
    Diegelman-Parente A; Bevilacqua PC
    J Mol Biol; 2002 Nov; 324(1):1-16. PubMed ID: 12421555
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Importance of short pseudoknot base pairs between two single-stranded regions of HDV ribozyme.
    Nishikawa F; Shirai M; Nishikawa S
    Nucleic Acids Symp Ser; 1999; (42):287-8. PubMed ID: 10780492
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Catalytic strategies of the hepatitis delta virus ribozymes.
    Shih IH; Been MD
    Annu Rev Biochem; 2002; 71():887-917. PubMed ID: 12045114
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A combinatorial method to isolate short ribozymes from complex ribozyme libraries.
    Arriola JT; Müller UF
    Nucleic Acids Res; 2020 Nov; 48(20):e116. PubMed ID: 33035338
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Ribozyme activity in the genomic and antigenomic RNA strands of hepatitis delta virus.
    Wadkins TS; Been MD
    Cell Mol Life Sci; 2002 Jan; 59(1):112-25. PubMed ID: 11846024
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Constructing an efficient trans-acting genomic HDV ribozyme.
    Kawakami J; Yuda K; Suh YA; Kumar PK; Nishikawa F; Maeda H; Taira K; Ohtsuka E; Nishikawa S
    FEBS Lett; 1996 Sep; 394(2):132-6. PubMed ID: 8843150
    [TBL] [Abstract][Full Text] [Related]  

  • 20. An allosteric ribozyme generator and an inverse folding ribozyme generator: Two computer programs for automated computational design of oligonucleotide-sensing allosteric hammerhead ribozymes with YES Boolean logic function based on experimentally validated algorithms.
    Kaloudas D; Penchovsky R
    Comput Biol Med; 2022 Jun; 145():105469. PubMed ID: 35398809
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.