These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
4. Homopolymer tract length dependent enrichments in functional regions of 27 eukaryotes and their novel dependence on the organism DNA (G+C)% composition. Zhou Y; Bizzaro JW; Marx KA BMC Genomics; 2004 Dec; 5():95. PubMed ID: 15598342 [TBL] [Abstract][Full Text] [Related]
5. Characteristics of the large (dA).(dT) homopolymer tracts in D. discoideum gene flanking and intron sequences. Marx KA; Hess ST; Blake RD J Biomol Struct Dyn; 1993 Aug; 11(1):57-66. PubMed ID: 8216948 [TBL] [Abstract][Full Text] [Related]
7. The ordering of nucleotides in the DNA: strong pyrimidine-purine patterns near homooligomer tracts. Nussinov R J Theor Biol; 1991 Mar; 149(1):21-42. PubMed ID: 1881144 [TBL] [Abstract][Full Text] [Related]
8. Distinct patterns in the dinucleotide nearest neighbors to G/C and A/T oligomers in eukaryotic sequences. Nussinov R J Mol Evol; 1991 Sep; 33(3):259-66. PubMed ID: 1757996 [TBL] [Abstract][Full Text] [Related]
9. Coding and non-coding DNA thermal stability differences in eukaryotes studied by melting simulation, base shuffling and DNA nearest neighbor frequency analysis. Long DD; Grosse I; Marx KA Biophys Chem; 2004 Jul; 110(1-2):25-38. PubMed ID: 15223141 [TBL] [Abstract][Full Text] [Related]
10. General nearest neighbor preferences in G/C oligomers interrupted by A/T: correlation with DNA structure. Nussinov R J Biomol Struct Dyn; 1990 Oct; 8(2):399-411. PubMed ID: 2268407 [TBL] [Abstract][Full Text] [Related]
11. [Characteristics of nucleotide blocks in coding and non-coding DNA sequences from different organisms]. Sprizhitskiĭ IuA; Nechipurenko IuD; Aleksandrov AA; Vol'kenshteĭn MV Mol Biol (Mosk); 1988; 22(2):338-56. PubMed ID: 3393146 [TBL] [Abstract][Full Text] [Related]
12. Molecular dynamics simulations of B '-DNA: sequence effects on A-tract-induced bending and flexibility. McConnell KJ; Beveridge DL J Mol Biol; 2001 Nov; 314(1):23-40. PubMed ID: 11724529 [TBL] [Abstract][Full Text] [Related]
14. [Analysis, identification and correction of some errors of model refseqs appeared in NCBI Human Gene Database by in silico cloning and experimental verification of novel human genes]. Zhang DL; Ji L; Li YD Yi Chuan Xue Bao; 2004 May; 31(5):431-43. PubMed ID: 15478601 [TBL] [Abstract][Full Text] [Related]
15. Solution conformation of the (-)-cis-anti-benzo[a]pyrenyl-dG adduct opposite dC in a DNA duplex: intercalation of the covalently attached BP ring into the helix with base displacement of the modified deoxyguanosine into the major groove. Cosman M; Hingerty BE; Luneva N; Amin S; Geacintov NE; Broyde S; Patel DJ Biochemistry; 1996 Jul; 35(30):9850-63. PubMed ID: 8703959 [TBL] [Abstract][Full Text] [Related]
16. Evidence for long poly(dA).poly(dT) tracts in D. discoideum DNA at high frequencies and their preferential avoidance of nucleosomal DNA core regions. Marx KA; Zhou Y; Kishawi IQ J Biomol Struct Dyn; 2006 Feb; 23(4):429-46. PubMed ID: 16363878 [TBL] [Abstract][Full Text] [Related]
17. Alignment of (dA).(dT) homopolymer tracts in gene flanking sequences suggests nucleosomal periodicity in D. discoideum DNA. Marx KA; Hess ST; Blake RD J Biomol Struct Dyn; 1994 Aug; 12(1):235-46. PubMed ID: 7848570 [TBL] [Abstract][Full Text] [Related]
18. Dynamics of DNA duplexes containing internal G.T, G.A, A.C, and T.C pairs: hydrogen exchange at and adjacent to mismatch sites. Patel DJ; Kozlowski SA; Ikuta S; Itakura K Fed Proc; 1984 Aug; 43(11):2663-70. PubMed ID: 6745451 [TBL] [Abstract][Full Text] [Related]
19. Ability of spermine to differentiate between DNA sequences--preferential stabilization of A-tracts. Patel MM; Anchordoquy TJ Biophys Chem; 2006 Jun; 122(1):5-15. PubMed ID: 16504371 [TBL] [Abstract][Full Text] [Related]