BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

230 related articles for article (PubMed ID: 32718320)

  • 1. Bovine breed-specific augmented reference graphs facilitate accurate sequence read mapping and unbiased variant discovery.
    Crysnanto D; Pausch H
    Genome Biol; 2020 Jul; 21(1):184. PubMed ID: 32718320
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Investigating the impact of reference assembly choice on genomic analyses in a cattle breed.
    Lloret-Villas A; Bhati M; Kadri NK; Fries R; Pausch H
    BMC Genomics; 2021 May; 22(1):363. PubMed ID: 34011274
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Accurate sequence variant genotyping in cattle using variation-aware genome graphs.
    Crysnanto D; Wurmser C; Pausch H
    Genet Sel Evol; 2019 May; 51(1):21. PubMed ID: 31092189
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Strategies for imputation to whole genome sequence using a single or multi-breed reference population in cattle.
    Brøndum RF; Guldbrandtsen B; Sahana G; Lund MS; Su G
    BMC Genomics; 2014 Aug; 15(1):728. PubMed ID: 25164068
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Whole genome resequencing of black Angus and Holstein cattle for SNP and CNV discovery.
    Stothard P; Choi JW; Basu U; Sumner-Thomson JM; Meng Y; Liao X; Moore SS
    BMC Genomics; 2011 Nov; 12():559. PubMed ID: 22085807
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Meta-analysis of sequence-based association studies across three cattle breeds reveals 25 QTL for fat and protein percentages in milk at nucleotide resolution.
    Pausch H; Emmerling R; Gredler-Grandl B; Fries R; Daetwyler HD; Goddard ME
    BMC Genomics; 2017 Nov; 18(1):853. PubMed ID: 29121857
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Consequences of splitting whole-genome sequencing effort over multiple breeds on imputation accuracy.
    Bouwman AC; Veerkamp RF
    BMC Genet; 2014 Oct; 15():105. PubMed ID: 25277486
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A cattle graph genome incorporating global breed diversity.
    Talenti A; Powell J; Hemmink JD; Cook EAJ; Wragg D; Jayaraman S; Paxton E; Ezeasor C; Obishakin ET; Agusi ER; Tijjani A; Amanyire W; Muhanguzi D; Marshall K; Fisch A; Ferreira BR; Qasim A; Chaudhry U; Wiener P; Toye P; Morrison LJ; Connelley T; Prendergast JGD
    Nat Commun; 2022 Feb; 13(1):910. PubMed ID: 35177600
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Fast alignment of reads to a variation graph with application to SNP detection.
    Monsu M; Comin M
    J Integr Bioinform; 2021 Nov; 18(4):. PubMed ID: 34783230
    [TBL] [Abstract][Full Text] [Related]  

  • 10. The size and composition of haplotype reference panels impact the accuracy of imputation from low-pass sequencing in cattle.
    Lloret-Villas A; Pausch H; Leonard AS
    Genet Sel Evol; 2023 May; 55(1):33. PubMed ID: 37170101
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Identification and annotation of breed-specific single nucleotide polymorphisms in Bos taurus genomes.
    Czech B; Frąszczak M; Mielczarek M; Szyda J
    PLoS One; 2018; 13(6):e0198419. PubMed ID: 29856873
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Whole genome characterization of autochthonous Bos taurus brachyceros and introduced Bos indicus indicus cattle breeds in Cameroon regarding their adaptive phenotypic traits and pathogen resistance.
    Paguem A; Abanda B; Achukwi MD; Baskaran P; Czemmel S; Renz A; Eisenbarth A
    BMC Genet; 2020 Jun; 21(1):64. PubMed ID: 32571206
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Removing reference bias and improving indel calling in ancient DNA data analysis by mapping to a sequence variation graph.
    Martiniano R; Garrison E; Jones ER; Manica A; Durbin R
    Genome Biol; 2020 Sep; 21(1):250. PubMed ID: 32943086
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Sequencing and annotated analysis of the Holstein cow genome.
    Kõks S; Lilleoja R; Reimann E; Salumets A; Reemann P; Jaakma Ü
    Mamm Genome; 2013 Aug; 24(7-8):309-21. PubMed ID: 23893136
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Single nucleotide polymorphism discovery in bovine liver using RNA-seq technology.
    Pareek CS; Błaszczyk P; Dziuba P; Czarnik U; Fraser L; Sobiech P; Pierzchała M; Feng Y; Kadarmideen HN; Kumar D
    PLoS One; 2017; 12(2):e0172687. PubMed ID: 28234981
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Evaluation of the accuracy of imputed sequence variant genotypes and their utility for causal variant detection in cattle.
    Pausch H; MacLeod IM; Fries R; Emmerling R; Bowman PJ; Daetwyler HD; Goddard ME
    Genet Sel Evol; 2017 Feb; 49(1):24. PubMed ID: 28222685
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Highly accurate sequence imputation enables precise QTL mapping in Brown Swiss cattle.
    Frischknecht M; Pausch H; Bapst B; Signer-Hasler H; Flury C; Garrick D; Stricker C; Fries R; Gredler-Grandl B
    BMC Genomics; 2017 Dec; 18(1):999. PubMed ID: 29284405
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Variation graph toolkit improves read mapping by representing genetic variation in the reference.
    Garrison E; Sirén J; Novak AM; Hickey G; Eizenga JM; Dawson ET; Jones W; Garg S; Markello C; Lin MF; Paten B; Durbin R
    Nat Biotechnol; 2018 Oct; 36(9):875-879. PubMed ID: 30125266
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Symposium review: Advances in sequencing technology herald a new frontier in cattle genomics and genome-enabled selection.
    Bickhart DM; McClure JC; Schnabel RD; Rosen BD; Medrano JF; Smith TPL
    J Dairy Sci; 2020 Jun; 103(6):5278-5290. PubMed ID: 32331872
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Hot topic: performance of bovine high-density genotyping platforms in Holsteins and Jerseys.
    Rincon G; Weber KL; Eenennaam AL; Golden BL; Medrano JF
    J Dairy Sci; 2011 Dec; 94(12):6116-21. PubMed ID: 22118099
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.