444 related articles for article (PubMed ID: 32728240)
1. An atlas of dynamic chromatin landscapes in mouse fetal development.
Gorkin DU; Barozzi I; Zhao Y; Zhang Y; Huang H; Lee AY; Li B; Chiou J; Wildberg A; Ding B; Zhang B; Wang M; Strattan JS; Davidson JM; Qiu Y; Afzal V; Akiyama JA; Plajzer-Frick I; Novak CS; Kato M; Garvin TH; Pham QT; Harrington AN; Mannion BJ; Lee EA; Fukuda-Yuzawa Y; He Y; Preissl S; Chee S; Han JY; Williams BA; Trout D; Amrhein H; Yang H; Cherry JM; Wang W; Gaulton K; Ecker JR; Shen Y; Dickel DE; Visel A; Pennacchio LA; Ren B
Nature; 2020 Jul; 583(7818):744-751. PubMed ID: 32728240
[TBL] [Abstract][Full Text] [Related]
2. Efficient chromatin accessibility mapping in situ by nucleosome-tethered tagmentation.
Henikoff S; Henikoff JG; Kaya-Okur HS; Ahmad K
Elife; 2020 Nov; 9():. PubMed ID: 33191916
[TBL] [Abstract][Full Text] [Related]
3. An ATAC-seq atlas of chromatin accessibility in mouse tissues.
Liu C; Wang M; Wei X; Wu L; Xu J; Dai X; Xia J; Cheng M; Yuan Y; Zhang P; Li J; Feng T; Chen A; Zhang W; Chen F; Shang Z; Zhang X; Peters BA; Liu L
Sci Data; 2019 May; 6(1):65. PubMed ID: 31110271
[TBL] [Abstract][Full Text] [Related]
4. The landscape of accessible chromatin in mammalian preimplantation embryos.
Wu J; Huang B; Chen H; Yin Q; Liu Y; Xiang Y; Zhang B; Liu B; Wang Q; Xia W; Li W; Li Y; Ma J; Peng X; Zheng H; Ming J; Zhang W; Zhang J; Tian G; Xu F; Chang Z; Na J; Yang X; Xie W
Nature; 2016 Jun; 534(7609):652-7. PubMed ID: 27309802
[TBL] [Abstract][Full Text] [Related]
5. Spatiotemporal DNA methylome dynamics of the developing mouse fetus.
He Y; Hariharan M; Gorkin DU; Dickel DE; Luo C; Castanon RG; Nery JR; Lee AY; Zhao Y; Huang H; Williams BA; Trout D; Amrhein H; Fang R; Chen H; Li B; Visel A; Pennacchio LA; Ren B; Ecker JR
Nature; 2020 Jul; 583(7818):752-759. PubMed ID: 32728242
[TBL] [Abstract][Full Text] [Related]
6. Occupancy maps of 208 chromatin-associated proteins in one human cell type.
Partridge EC; Chhetri SB; Prokop JW; Ramaker RC; Jansen CS; Goh ST; Mackiewicz M; Newberry KM; Brandsmeier LA; Meadows SK; Messer CL; Hardigan AA; Coppola CJ; Dean EC; Jiang S; Savic D; Mortazavi A; Wold BJ; Myers RM; Mendenhall EM
Nature; 2020 Jul; 583(7818):720-728. PubMed ID: 32728244
[TBL] [Abstract][Full Text] [Related]
7. Identification and Massively Parallel Characterization of Regulatory Elements Driving Neural Induction.
Inoue F; Kreimer A; Ashuach T; Ahituv N; Yosef N
Cell Stem Cell; 2019 Nov; 25(5):713-727.e10. PubMed ID: 31631012
[TBL] [Abstract][Full Text] [Related]
8. A comparative analysis of chromatin accessibility in cattle, pig, and mouse tissues.
Halstead MM; Kern C; Saelao P; Wang Y; Chanthavixay G; Medrano JF; Van Eenennaam AL; Korf I; Tuggle CK; Ernst CW; Zhou H; Ross PJ
BMC Genomics; 2020 Oct; 21(1):698. PubMed ID: 33028202
[TBL] [Abstract][Full Text] [Related]
9. Genome-wide analysis of chromatin accessibility using ATAC-seq.
Shashikant T; Ettensohn CA
Methods Cell Biol; 2019; 151():219-235. PubMed ID: 30948010
[TBL] [Abstract][Full Text] [Related]
10. Gonadal supporting cells acquire sex-specific chromatin landscapes during mammalian sex determination.
Garcia-Moreno SA; Futtner CR; Salamone IM; Gonen N; Lovell-Badge R; Maatouk DM
Dev Biol; 2019 Feb; 446(2):168-179. PubMed ID: 30594505
[TBL] [Abstract][Full Text] [Related]
11. The chromatin accessibility landscape of primary human cancers.
Corces MR; Granja JM; Shams S; Louie BH; Seoane JA; Zhou W; Silva TC; Groeneveld C; Wong CK; Cho SW; Satpathy AT; Mumbach MR; Hoadley KA; Robertson AG; Sheffield NC; Felau I; Castro MAA; Berman BP; Staudt LM; Zenklusen JC; Laird PW; Curtis C; ; Greenleaf WJ; Chang HY
Science; 2018 Oct; 362(6413):. PubMed ID: 30361341
[TBL] [Abstract][Full Text] [Related]
12. A map of the cis-regulatory sequences in the mouse genome.
Shen Y; Yue F; McCleary DF; Ye Z; Edsall L; Kuan S; Wagner U; Dixon J; Lee L; Lobanenkov VV; Ren B
Nature; 2012 Aug; 488(7409):116-20. PubMed ID: 22763441
[TBL] [Abstract][Full Text] [Related]
13. A unique chromatin signature uncovers early developmental enhancers in humans.
Rada-Iglesias A; Bajpai R; Swigut T; Brugmann SA; Flynn RA; Wysocka J
Nature; 2011 Feb; 470(7333):279-83. PubMed ID: 21160473
[TBL] [Abstract][Full Text] [Related]
14. Assessing Chromatin Accessibility During WBR in Acoels.
Gehrke AR; Srivastava M
Methods Mol Biol; 2022; 2450():549-561. PubMed ID: 35359328
[TBL] [Abstract][Full Text] [Related]
15. The cis-regulatory dynamics of embryonic development at single-cell resolution.
Cusanovich DA; Reddington JP; Garfield DA; Daza RM; Aghamirzaie D; Marco-Ferreres R; Pliner HA; Christiansen L; Qiu X; Steemers FJ; Trapnell C; Shendure J; Furlong EEM
Nature; 2018 Mar; 555(7697):538-542. PubMed ID: 29539636
[TBL] [Abstract][Full Text] [Related]
16. Hyperacetylated chromatin domains mark cell type-specific genes and suggest distinct modes of enhancer function.
Fox S; Myers JA; Davidson C; Getman M; Kingsley PD; Frankiewicz N; Bulger M
Nat Commun; 2020 Sep; 11(1):4544. PubMed ID: 32917861
[TBL] [Abstract][Full Text] [Related]
17. Expanded encyclopaedias of DNA elements in the human and mouse genomes.
; Moore JE; Purcaro MJ; Pratt HE; Epstein CB; Shoresh N; Adrian J; Kawli T; Davis CA; Dobin A; Kaul R; Halow J; Van Nostrand EL; Freese P; Gorkin DU; Shen Y; He Y; Mackiewicz M; Pauli-Behn F; Williams BA; Mortazavi A; Keller CA; Zhang XO; Elhajjajy SI; Huey J; Dickel DE; Snetkova V; Wei X; Wang X; Rivera-Mulia JC; Rozowsky J; Zhang J; Chhetri SB; Zhang J; Victorsen A; White KP; Visel A; Yeo GW; Burge CB; Lécuyer E; Gilbert DM; Dekker J; Rinn J; Mendenhall EM; Ecker JR; Kellis M; Klein RJ; Noble WS; Kundaje A; Guigó R; Farnham PJ; Cherry JM; Myers RM; Ren B; Graveley BR; Gerstein MB; Pennacchio LA; Snyder MP; Bernstein BE; Wold B; Hardison RC; Gingeras TR; Stamatoyannopoulos JA; Weng Z
Nature; 2020 Jul; 583(7818):699-710. PubMed ID: 32728249
[TBL] [Abstract][Full Text] [Related]
18. Quantification, Dynamic Visualization, and Validation of Bias in ATAC-Seq Data with ataqv.
Orchard P; Kyono Y; Hensley J; Kitzman JO; Parker SCJ
Cell Syst; 2020 Mar; 10(3):298-306.e4. PubMed ID: 32213349
[TBL] [Abstract][Full Text] [Related]
19. A single-cell atlas of chromatin accessibility in the human genome.
Zhang K; Hocker JD; Miller M; Hou X; Chiou J; Poirion OB; Qiu Y; Li YE; Gaulton KJ; Wang A; Preissl S; Ren B
Cell; 2021 Nov; 184(24):5985-6001.e19. PubMed ID: 34774128
[TBL] [Abstract][Full Text] [Related]
20. ATAC-Seq Analysis of Accessible Chromatin: From Experimental Steps to Data Analysis.
Tatara M; Ikeda T; Namekawa SH; Maezawa S
Methods Mol Biol; 2023; 2577():65-81. PubMed ID: 36173566
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]