325 related articles for article (PubMed ID: 32728250)
1. Global reference mapping of human transcription factor footprints.
Vierstra J; Lazar J; Sandstrom R; Halow J; Lee K; Bates D; Diegel M; Dunn D; Neri F; Haugen E; Rynes E; Reynolds A; Nelson J; Johnson A; Frerker M; Buckley M; Kaul R; Meuleman W; Stamatoyannopoulos JA
Nature; 2020 Jul; 583(7818):729-736. PubMed ID: 32728250
[TBL] [Abstract][Full Text] [Related]
2. An expansive human regulatory lexicon encoded in transcription factor footprints.
Neph S; Vierstra J; Stergachis AB; Reynolds AP; Haugen E; Vernot B; Thurman RE; John S; Sandstrom R; Johnson AK; Maurano MT; Humbert R; Rynes E; Wang H; Vong S; Lee K; Bates D; Diegel M; Roach V; Dunn D; Neri J; Schafer A; Hansen RS; Kutyavin T; Giste E; Weaver M; Canfield T; Sabo P; Zhang M; Balasundaram G; Byron R; MacCoss MJ; Akey JM; Bender MA; Groudine M; Kaul R; Stamatoyannopoulos JA
Nature; 2012 Sep; 489(7414):83-90. PubMed ID: 22955618
[TBL] [Abstract][Full Text] [Related]
3. The accessible chromatin landscape of the human genome.
Thurman RE; Rynes E; Humbert R; Vierstra J; Maurano MT; Haugen E; Sheffield NC; Stergachis AB; Wang H; Vernot B; Garg K; John S; Sandstrom R; Bates D; Boatman L; Canfield TK; Diegel M; Dunn D; Ebersol AK; Frum T; Giste E; Johnson AK; Johnson EM; Kutyavin T; Lajoie B; Lee BK; Lee K; London D; Lotakis D; Neph S; Neri F; Nguyen ED; Qu H; Reynolds AP; Roach V; Safi A; Sanchez ME; Sanyal A; Shafer A; Simon JM; Song L; Vong S; Weaver M; Yan Y; Zhang Z; Zhang Z; Lenhard B; Tewari M; Dorschner MO; Hansen RS; Navas PA; Stamatoyannopoulos G; Iyer VR; Lieb JD; Sunyaev SR; Akey JM; Sabo PJ; Kaul R; Furey TS; Dekker J; Crawford GE; Stamatoyannopoulos JA
Nature; 2012 Sep; 489(7414):75-82. PubMed ID: 22955617
[TBL] [Abstract][Full Text] [Related]
4. Most brain disease-associated and eQTL haplotypes are not located within transcription factor DNase-seq footprints in brain.
Handel AE; Gallone G; Zameel Cader M; Ponting CP
Hum Mol Genet; 2017 Jan; 26(1):79-89. PubMed ID: 27798116
[TBL] [Abstract][Full Text] [Related]
5. An integrated encyclopedia of DNA elements in the human genome.
ENCODE Project Consortium
Nature; 2012 Sep; 489(7414):57-74. PubMed ID: 22955616
[TBL] [Abstract][Full Text] [Related]
6. Index and biological spectrum of human DNase I hypersensitive sites.
Meuleman W; Muratov A; Rynes E; Halow J; Lee K; Bates D; Diegel M; Dunn D; Neri F; Teodosiadis A; Reynolds A; Haugen E; Nelson J; Johnson A; Frerker M; Buckley M; Sandstrom R; Vierstra J; Kaul R; Stamatoyannopoulos J
Nature; 2020 Aug; 584(7820):244-251. PubMed ID: 32728217
[TBL] [Abstract][Full Text] [Related]
7. DNase I sensitivity QTLs are a major determinant of human expression variation.
Degner JF; Pai AA; Pique-Regi R; Veyrieras JB; Gaffney DJ; Pickrell JK; De Leon S; Michelini K; Lewellen N; Crawford GE; Stephens M; Gilad Y; Pritchard JK
Nature; 2012 Feb; 482(7385):390-4. PubMed ID: 22307276
[TBL] [Abstract][Full Text] [Related]
8. Genomic Footprinting Analyses from DNase-seq Data to Construct Gene Regulatory Networks.
Moyano TC; Gutiérrez RA; Alvarez JM
Methods Mol Biol; 2021; 2328():25-46. PubMed ID: 34251618
[TBL] [Abstract][Full Text] [Related]
9. Systematic localization of common disease-associated variation in regulatory DNA.
Maurano MT; Humbert R; Rynes E; Thurman RE; Haugen E; Wang H; Reynolds AP; Sandstrom R; Qu H; Brody J; Shafer A; Neri F; Lee K; Kutyavin T; Stehling-Sun S; Johnson AK; Canfield TK; Giste E; Diegel M; Bates D; Hansen RS; Neph S; Sabo PJ; Heimfeld S; Raubitschek A; Ziegler S; Cotsapas C; Sotoodehnia N; Glass I; Sunyaev SR; Kaul R; Stamatoyannopoulos JA
Science; 2012 Sep; 337(6099):1190-5. PubMed ID: 22955828
[TBL] [Abstract][Full Text] [Related]
10. High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells.
Boyle AP; Song L; Lee BK; London D; Keefe D; Birney E; Iyer VR; Crawford GE; Furey TS
Genome Res; 2011 Mar; 21(3):456-64. PubMed ID: 21106903
[TBL] [Abstract][Full Text] [Related]
11. Genome-wide discovery of active regulatory elements and transcription factor footprints in
Ho MCW; Quintero-Cadena P; Sternberg PW
Genome Res; 2017 Dec; 27(12):2108-2119. PubMed ID: 29074739
[TBL] [Abstract][Full Text] [Related]
12. On the identification of potential regulatory variants within genome wide association candidate SNP sets.
Chen CY; Chang IS; Hsiung CA; Wasserman WW
BMC Med Genomics; 2014 Jun; 7():34. PubMed ID: 24920305
[TBL] [Abstract][Full Text] [Related]
13. Explicit DNase sequence bias modeling enables high-resolution transcription factor footprint detection.
Yardımcı GG; Frank CL; Crawford GE; Ohler U
Nucleic Acids Res; 2014 Oct; 42(19):11865-78. PubMed ID: 25294828
[TBL] [Abstract][Full Text] [Related]
14. Genome-wide identification of regulatory DNA elements and protein-binding footprints using signatures of open chromatin in Arabidopsis.
Zhang W; Zhang T; Wu Y; Jiang J
Plant Cell; 2012 Jul; 24(7):2719-31. PubMed ID: 22773751
[TBL] [Abstract][Full Text] [Related]
15. Which Genetics Variants in DNase-Seq Footprints Are More Likely to Alter Binding?
Moyerbrailean GA; Kalita CA; Harvey CT; Wen X; Luca F; Pique-Regi R
PLoS Genet; 2016 Feb; 12(2):e1005875. PubMed ID: 26901046
[TBL] [Abstract][Full Text] [Related]
16. Mapping and dynamics of regulatory DNA and transcription factor networks in A. thaliana.
Sullivan AM; Arsovski AA; Lempe J; Bubb KL; Weirauch MT; Sabo PJ; Sandstrom R; Thurman RE; Neph S; Reynolds AP; Stergachis AB; Vernot B; Johnson AK; Haugen E; Sullivan ST; Thompson A; Neri FV; Weaver M; Diegel M; Mnaimneh S; Yang A; Hughes TR; Nemhauser JL; Queitsch C; Stamatoyannopoulos JA
Cell Rep; 2014 Sep; 8(6):2015-2030. PubMed ID: 25220462
[TBL] [Abstract][Full Text] [Related]
17. Large-scale identification of sequence variants influencing human transcription factor occupancy in vivo.
Maurano MT; Haugen E; Sandstrom R; Vierstra J; Shafer A; Kaul R; Stamatoyannopoulos JA
Nat Genet; 2015 Dec; 47(12):1393-401. PubMed ID: 26502339
[TBL] [Abstract][Full Text] [Related]
18. Conservation of trans-acting circuitry during mammalian regulatory evolution.
Stergachis AB; Neph S; Sandstrom R; Haugen E; Reynolds AP; Zhang M; Byron R; Canfield T; Stelhing-Sun S; Lee K; Thurman RE; Vong S; Bates D; Neri F; Diegel M; Giste E; Dunn D; Vierstra J; Hansen RS; Johnson AK; Sabo PJ; Wilken MS; Reh TA; Treuting PM; Kaul R; Groudine M; Bender MA; Borenstein E; Stamatoyannopoulos JA
Nature; 2014 Nov; 515(7527):365-70. PubMed ID: 25409825
[TBL] [Abstract][Full Text] [Related]
19. Predicting cell-type-specific gene expression from regions of open chromatin.
Natarajan A; Yardimci GG; Sheffield NC; Crawford GE; Ohler U
Genome Res; 2012 Sep; 22(9):1711-22. PubMed ID: 22955983
[TBL] [Abstract][Full Text] [Related]
20. Global mapping of protein-DNA interactions in vivo by digital genomic footprinting.
Hesselberth JR; Chen X; Zhang Z; Sabo PJ; Sandstrom R; Reynolds AP; Thurman RE; Neph S; Kuehn MS; Noble WS; Fields S; Stamatoyannopoulos JA
Nat Methods; 2009 Apr; 6(4):283-9. PubMed ID: 19305407
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
