These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
164 related articles for article (PubMed ID: 32738892)
1. RiboMiner: a toolset for mining multi-dimensional features of the translatome with ribosome profiling data. Li F; Xing X; Xiao Z; Xu G; Yang X BMC Bioinformatics; 2020 Aug; 21(1):340. PubMed ID: 32738892 [TBL] [Abstract][Full Text] [Related]
2. Computational methods for ribosome profiling data analysis. Kiniry SJ; Michel AM; Baranov PV Wiley Interdiscip Rev RNA; 2020 May; 11(3):e1577. PubMed ID: 31760685 [TBL] [Abstract][Full Text] [Related]
5. Computational resources for ribosome profiling: from database to Web server and software. Wang H; Wang Y; Xie Z Brief Bioinform; 2019 Jan; 20(1):144-155. PubMed ID: 28968766 [TBL] [Abstract][Full Text] [Related]
6. Survey of the translation shifts in hepatocellular carcinoma with ribosome profiling. Zou Q; Xiao Z; Huang R; Wang X; Wang X; Zhao H; Yang X Theranostics; 2019; 9(14):4141-4155. PubMed ID: 31281537 [TBL] [Abstract][Full Text] [Related]
8. RiboDiff: detecting changes of mRNA translation efficiency from ribosome footprints. Zhong Y; Karaletsos T; Drewe P; Sreedharan VT; Kuo D; Singh K; Wendel HG; Rätsch G Bioinformatics; 2017 Jan; 33(1):139-141. PubMed ID: 27634950 [TBL] [Abstract][Full Text] [Related]
9. Exploring Ribosome-Positioning on Translating Transcripts with Ribosome Profiling. Cope AL; Vellappan S; Favate JS; Skalenko KS; Yadavalli SS; Shah P Methods Mol Biol; 2022; 2404():83-110. PubMed ID: 34694605 [TBL] [Abstract][Full Text] [Related]
10. RiboGraph: an interactive visualization system for ribosome profiling data at read length resolution. Chacko J; Ozadam H; Cenik C Bioinformatics; 2024 Jun; 40(6):. PubMed ID: 38897662 [TBL] [Abstract][Full Text] [Related]
11. Shoelaces: an interactive tool for ribosome profiling processing and visualization. Birkeland Å; ChyŻyńska K; Valen E BMC Genomics; 2018 Jul; 19(1):543. PubMed ID: 30021517 [TBL] [Abstract][Full Text] [Related]
12. RiboVIEW: a computational framework for visualization, quality control and statistical analysis of ribosome profiling data. Legrand C; Tuorto F Nucleic Acids Res; 2020 Jan; 48(2):e7. PubMed ID: 31777932 [TBL] [Abstract][Full Text] [Related]
13. Riboexp: an interpretable reinforcement learning framework for ribosome density modeling. Hu H; Liu X; Xiao A; Li Y; Zhang C; Jiang T; Zhao D; Song S; Zeng J Brief Bioinform; 2021 Sep; 22(5):. PubMed ID: 33479731 [TBL] [Abstract][Full Text] [Related]
14. RiboGalaxy: A Galaxy-based Web Platform for Ribosome Profiling Data Processing - 2023 Update. Fedorova AD; Tierney JAS; Michel AM; Baranov PV J Mol Biol; 2023 Jul; 435(14):168043. PubMed ID: 37356899 [TBL] [Abstract][Full Text] [Related]
15. Exploring Ribosome Positioning on Translating Transcripts with Ribosome Profiling. Spealman P; Wang H; May G; Kingsford C; McManus CJ Methods Mol Biol; 2016; 1358():71-97. PubMed ID: 26463378 [TBL] [Abstract][Full Text] [Related]
16. mQC: A post-mapping data exploration tool for ribosome profiling. Verbruggen S; Menschaert G Comput Methods Programs Biomed; 2019 Nov; 181():104806. PubMed ID: 30401579 [TBL] [Abstract][Full Text] [Related]
17. riboviz: analysis and visualization of ribosome profiling datasets. Carja O; Xing T; Wallace EWJ; Plotkin JB; Shah P BMC Bioinformatics; 2017 Oct; 18(1):461. PubMed ID: 29070028 [TBL] [Abstract][Full Text] [Related]
18. The extent of ribosome queuing in budding yeast. Diament A; Feldman A; Schochet E; Kupiec M; Arava Y; Tuller T PLoS Comput Biol; 2018 Jan; 14(1):e1005951. PubMed ID: 29377894 [TBL] [Abstract][Full Text] [Related]
19. Using the Ribodeblur pipeline to recover A-sites from yeast ribosome profiling data. Wang H; Kingsford C; McManus CJ Methods; 2018 Mar; 137():67-70. PubMed ID: 29330118 [TBL] [Abstract][Full Text] [Related]
20. RiboTools: a Galaxy toolbox for qualitative ribosome profiling analysis. Legendre R; Baudin-Baillieu A; Hatin I; Namy O Bioinformatics; 2015 Aug; 31(15):2586-8. PubMed ID: 25812744 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]