341 related articles for article (PubMed ID: 32746918)
1. Long-read-based human genomic structural variation detection with cuteSV.
Jiang T; Liu Y; Jiang Y; Li J; Gao Y; Cui Z; Liu Y; Liu B; Wang Y
Genome Biol; 2020 Aug; 21(1):189. PubMed ID: 32746918
[TBL] [Abstract][Full Text] [Related]
2. Structural Variant Detection from Long-Read Sequencing Data with cuteSV.
Jiang T; Liu S; Cao S; Wang Y
Methods Mol Biol; 2022; 2493():137-151. PubMed ID: 35751813
[TBL] [Abstract][Full Text] [Related]
3. MAMnet: detecting and genotyping deletions and insertions based on long reads and a deep learning approach.
Ding H; Luo J
Brief Bioinform; 2022 Sep; 23(5):. PubMed ID: 35580841
[TBL] [Abstract][Full Text] [Related]
4. Comprehensive evaluation of structural variant genotyping methods based on long-read sequencing data.
Duan X; Pan M; Fan S
BMC Genomics; 2022 Apr; 23(1):324. PubMed ID: 35461238
[TBL] [Abstract][Full Text] [Related]
5. Comparison of structural variants detected by PacBio-CLR and ONT sequencing in pear.
Liu Y; Zhang M; Wang R; Li B; Jiang Y; Sun M; Chang Y; Wu J
BMC Genomics; 2022 Dec; 23(1):830. PubMed ID: 36517766
[TBL] [Abstract][Full Text] [Related]
6. SVJedi: genotyping structural variations with long reads.
Lecompte L; Peterlongo P; Lavenier D; Lemaitre C
Bioinformatics; 2020 Nov; 36(17):4568-4575. PubMed ID: 32437523
[TBL] [Abstract][Full Text] [Related]
7. Long-Read Based Novel Sequence Insertion Detection With rCANID.
Jiang T; Fu Y; Liu B; Wang Y
IEEE Trans Nanobioscience; 2019 Jul; 18(3):343-352. PubMed ID: 30946672
[TBL] [Abstract][Full Text] [Related]
8. rMFilter: acceleration of long read-based structure variation calling by chimeric read filtering.
Liu B; Jiang T; Yiu SM; Li J; Wang Y
Bioinformatics; 2017 Sep; 33(17):2750-2752. PubMed ID: 28482046
[TBL] [Abstract][Full Text] [Related]
9. BreakNet: detecting deletions using long reads and a deep learning approach.
Luo J; Ding H; Shen J; Zhai H; Wu Z; Yan C; Luo H
BMC Bioinformatics; 2021 Dec; 22(1):577. PubMed ID: 34856923
[TBL] [Abstract][Full Text] [Related]
10. PanSVR: Pan-Genome Augmented Short Read Realignment for Sensitive Detection of Structural Variations.
Li G; Jiang T; Li J; Wang Y
Front Genet; 2021; 12():731515. PubMed ID: 34490049
[TBL] [Abstract][Full Text] [Related]
11. SVLR: Genome Structural Variant Detection Using Long-Read Sequencing Data.
Gu W; Zhou A; Wang L; Sun S; Cui X; Zhu D
J Comput Biol; 2021 Aug; 28(8):774-788. PubMed ID: 33973820
[TBL] [Abstract][Full Text] [Related]
12. Kled: an ultra-fast and sensitive structural variant detection tool for long-read sequencing data.
Zhang Z; Jiang T; Li G; Cao S; Liu Y; Liu B; Wang Y
Brief Bioinform; 2024 Jan; 25(2):. PubMed ID: 38385878
[TBL] [Abstract][Full Text] [Related]
13. SKSV: ultrafast structural variation detection from circular consensus sequencing reads.
Liu Y; Jiang T; Su J; Liu B; Zang T; Wang Y
Bioinformatics; 2021 Oct; 37(20):3647-3649. PubMed ID: 33963826
[TBL] [Abstract][Full Text] [Related]
14. Benchmarking long-read aligners and SV callers for structural variation detection in Oxford nanopore sequencing data.
Helal AA; Saad BT; Saad MT; Mosaad GS; Aboshanab KM
Sci Rep; 2024 Mar; 14(1):6160. PubMed ID: 38486064
[TBL] [Abstract][Full Text] [Related]
15. A recurrence-based approach for validating structural variation using long-read sequencing technology.
Zhao X; Weber AM; Mills RE
Gigascience; 2017 Aug; 6(8):1-9. PubMed ID: 28873962
[TBL] [Abstract][Full Text] [Related]
16. SVvalidation: A long-read-based validation method for genomic structural variation.
Zheng Y; Shang X
PLoS One; 2024; 19(1):e0291741. PubMed ID: 38181020
[TBL] [Abstract][Full Text] [Related]
17. Seeksv: an accurate tool for somatic structural variation and virus integration detection.
Liang Y; Qiu K; Liao B; Zhu W; Huang X; Li L; Chen X; Li K
Bioinformatics; 2017 Jan; 33(2):184-191. PubMed ID: 27634948
[TBL] [Abstract][Full Text] [Related]
18. Whole-genome sequencing with long reads reveals complex structure and origin of structural variation in human genetic variations and somatic mutations in cancer.
Fujimoto A; Wong JH; Yoshii Y; Akiyama S; Tanaka A; Yagi H; Shigemizu D; Nakagawa H; Mizokami M; Shimada M
Genome Med; 2021 Apr; 13(1):65. PubMed ID: 33910608
[TBL] [Abstract][Full Text] [Related]
19. Evaluation of Germline Structural Variant Calling Methods for Nanopore Sequencing Data.
Bolognini D; Magi A
Front Genet; 2021; 12():761791. PubMed ID: 34868242
[TBL] [Abstract][Full Text] [Related]
20. LAMSA: fast split read alignment with long approximate matches.
Liu B; Gao Y; Wang Y
Bioinformatics; 2017 Jan; 33(2):192-201. PubMed ID: 27667793
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
