BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

399 related articles for article (PubMed ID: 32777825)

  • 1. APRICOT: Advanced Platform for Reproducible Infrastructures in the Cloud via Open Tools.
    Giménez-Alventosa V; Segrelles JD; Moltó G; Roca-Sogorb M
    Methods Inf Med; 2020 Dec; 59(S 02):e33-e45. PubMed ID: 32777825
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Transcriptome annotation in the cloud: complexity, best practices, and cost.
    Alvarez RV; Mariño-Ramírez L; Landsman D
    Gigascience; 2021 Jan; 10(2):. PubMed ID: 33511996
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Integration of the Rosetta suite with the python software stack via reproducible packaging and core programming interfaces for distributed simulation.
    Ford AS; Weitzner BD; Bahl CD
    Protein Sci; 2020 Jan; 29(1):43-51. PubMed ID: 31495995
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Laniakea: an open solution to provide Galaxy "on-demand" instances over heterogeneous cloud infrastructures.
    Tangaro MA; Donvito G; Antonacci M; Chiara M; Mandreoli P; Pesole G; Zambelli F
    Gigascience; 2020 Apr; 9(4):. PubMed ID: 32252069
    [TBL] [Abstract][Full Text] [Related]  

  • 5. PhenoMeNal: processing and analysis of metabolomics data in the cloud.
    Peters K; Bradbury J; Bergmann S; Capuccini M; Cascante M; de Atauri P; Ebbels TMD; Foguet C; Glen R; Gonzalez-Beltran A; Günther UL; Handakas E; Hankemeier T; Haug K; Herman S; Holub P; Izzo M; Jacob D; Johnson D; Jourdan F; Kale N; Karaman I; Khalili B; Emami Khonsari P; Kultima K; Lampa S; Larsson A; Ludwig C; Moreno P; Neumann S; Novella JA; O'Donovan C; Pearce JTM; Peluso A; Piras ME; Pireddu L; Reed MAC; Rocca-Serra P; Roger P; Rosato A; Rueedi R; Ruttkies C; Sadawi N; Salek RM; Sansone SA; Selivanov V; Spjuth O; Schober D; Thévenot EA; Tomasoni M; van Rijswijk M; van Vliet M; Viant MR; Weber RJM; Zanetti G; Steinbeck C
    Gigascience; 2019 Feb; 8(2):. PubMed ID: 30535405
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Toward collaborative open data science in metabolomics using Jupyter Notebooks and cloud computing.
    Mendez KM; Pritchard L; Reinke SN; Broadhurst DI
    Metabolomics; 2019 Sep; 15(10):125. PubMed ID: 31522294
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Genomics Virtual Laboratory: A Practical Bioinformatics Workbench for the Cloud.
    Afgan E; Sloggett C; Goonasekera N; Makunin I; Benson D; Crowe M; Gladman S; Kowsar Y; Pheasant M; Horst R; Lonie A
    PLoS One; 2015; 10(10):e0140829. PubMed ID: 26501966
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Neuroscience Cloud Analysis As a Service: An open-source platform for scalable, reproducible data analysis.
    Abe T; Kinsella I; Saxena S; Buchanan EK; Couto J; Briggs J; Kitt SL; Glassman R; Zhou J; Paninski L; Cunningham JP
    Neuron; 2022 Sep; 110(17):2771-2789.e7. PubMed ID: 35870448
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Cloud-enabled Biodepot workflow builder integrates image processing using Fiji with reproducible data analysis using Jupyter notebooks.
    Hung LH; Straw E; Reddy S; Schmitz R; Colburn Z; Yeung KY
    Sci Rep; 2022 Sep; 12(1):14920. PubMed ID: 36056115
    [TBL] [Abstract][Full Text] [Related]  

  • 10. KNIME for reproducible cross-domain analysis of life science data.
    Fillbrunn A; Dietz C; Pfeuffer J; Rahn R; Landrum GA; Berthold MR
    J Biotechnol; 2017 Nov; 261():149-156. PubMed ID: 28757290
    [TBL] [Abstract][Full Text] [Related]  

  • 11. iTools: a framework for classification, categorization and integration of computational biology resources.
    Dinov ID; Rubin D; Lorensen W; Dugan J; Ma J; Murphy S; Kirschner B; Bug W; Sherman M; Floratos A; Kennedy D; Jagadish HV; Schmidt J; Athey B; Califano A; Musen M; Altman R; Kikinis R; Kohane I; Delp S; Parker DS; Toga AW
    PLoS One; 2008 May; 3(5):e2265. PubMed ID: 18509477
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Galaxy CloudMan: delivering cloud compute clusters.
    Afgan E; Baker D; Coraor N; Chapman B; Nekrutenko A; Taylor J
    BMC Bioinformatics; 2010 Dec; 11 Suppl 12(Suppl 12):S4. PubMed ID: 21210983
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Using cloud computing infrastructure with CloudBioLinux, CloudMan, and Galaxy.
    Afgan E; Chapman B; Jadan M; Franke V; Taylor J
    Curr Protoc Bioinformatics; 2012 Jun; Chapter 11():11.9.1-11.9.20. PubMed ID: 22700313
    [TBL] [Abstract][Full Text] [Related]  

  • 14. MaxQuant and MSstats in Galaxy Enable Reproducible Cloud-Based Analysis of Quantitative Proteomics Experiments for Everyone.
    Pinter N; Glätzer D; Fahrner M; Fröhlich K; Johnson J; Grüning BA; Warscheid B; Drepper F; Schilling O; Föll MC
    J Proteome Res; 2022 Jun; 21(6):1558-1565. PubMed ID: 35503992
    [TBL] [Abstract][Full Text] [Related]  

  • 15. RT-Cloud: A cloud-based software framework to simplify and standardize real-time fMRI.
    Wallace G; Polcyn S; Brooks PP; Mennen AC; Zhao K; Scotti PS; Michelmann S; Li K; Turk-Browne NB; Cohen JD; Norman KA
    Neuroimage; 2022 Aug; 257():119295. PubMed ID: 35580808
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Automating NEURON Simulation Deployment in Cloud Resources.
    Stockton DB; Santamaria F
    Neuroinformatics; 2017 Jan; 15(1):51-70. PubMed ID: 27655341
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Support for Taverna workflows in the VPH-Share cloud platform.
    Kasztelnik M; Coto E; Bubak M; Malawski M; Nowakowski P; Arenas J; Saglimbeni A; Testi D; Frangi AF
    Comput Methods Programs Biomed; 2017 Jul; 146():37-46. PubMed ID: 28688488
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Cloud Computing for Metagenomics: Building a Personalized Computational Platform for Pipeline Analyses.
    Callaghan M
    Methods Mol Biol; 2023; 2649():261-279. PubMed ID: 37258867
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Bioclipse 2: a scriptable integration platform for the life sciences.
    Spjuth O; Alvarsson J; Berg A; Eklund M; Kuhn S; Mäsak C; Torrance G; Wagener J; Willighagen EL; Steinbeck C; Wikberg JE
    BMC Bioinformatics; 2009 Dec; 10():397. PubMed ID: 19958528
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Democratizing data-independent acquisition proteomics analysis on public cloud infrastructures via the Galaxy framework.
    Fahrner M; Föll MC; Grüning BA; Bernt M; Röst H; Schilling O
    Gigascience; 2022 Feb; 11():. PubMed ID: 35166338
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 20.