These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
301 related articles for article (PubMed ID: 32778056)
1. SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis. Volant S; Lechat P; Woringer P; Motreff L; Campagne P; Malabat C; Kennedy S; Ghozlane A BMC Bioinformatics; 2020 Aug; 21(1):345. PubMed ID: 32778056 [TBL] [Abstract][Full Text] [Related]
2. VITCOMIC2: visualization tool for the phylogenetic composition of microbial communities based on 16S rRNA gene amplicons and metagenomic shotgun sequencing. Mori H; Maruyama T; Yano M; Yamada T; Kurokawa K BMC Syst Biol; 2018 Mar; 12(Suppl 2):30. PubMed ID: 29560821 [TBL] [Abstract][Full Text] [Related]
3. GLOSSary: the GLobal Ocean 16S subunit web accessible resource. Tangherlini M; Miralto M; Colantuono C; Sangiovanni M; Dell' Anno A; Corinaldesi C; Danovaro R; Chiusano ML BMC Bioinformatics; 2018 Nov; 19(Suppl 15):443. PubMed ID: 30497362 [TBL] [Abstract][Full Text] [Related]
4. Calypso: a user-friendly web-server for mining and visualizing microbiome-environment interactions. Zakrzewski M; Proietti C; Ellis JJ; Hasan S; Brion MJ; Berger B; Krause L Bioinformatics; 2017 Mar; 33(5):782-783. PubMed ID: 28025202 [TBL] [Abstract][Full Text] [Related]
5. ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data. Kieser S; Brown J; Zdobnov EM; Trajkovski M; McCue LA BMC Bioinformatics; 2020 Jun; 21(1):257. PubMed ID: 32571209 [TBL] [Abstract][Full Text] [Related]
6. MetaDEGalaxy: Galaxy workflow for differential abundance analysis of 16s metagenomic data. Thang MWC; Chua XY; Price G; Gorse D; Field MA F1000Res; 2019; 8():726. PubMed ID: 31737256 [TBL] [Abstract][Full Text] [Related]
7. SLIM: a flexible web application for the reproducible processing of environmental DNA metabarcoding data. Dufresne Y; Lejzerowicz F; Perret-Gentil LA; Pawlowski J; Cordier T BMC Bioinformatics; 2019 Feb; 20(1):88. PubMed ID: 30782112 [TBL] [Abstract][Full Text] [Related]
8. MetaTopics: an integration tool to analyze microbial community profile by topic model. Yan J; Chuai G; Qi T; Shao F; Zhou C; Zhu C; Yang J; Yu Y; Shi C; Kang N; He Y; Liu Q BMC Genomics; 2017 Jan; 18(Suppl 1):962. PubMed ID: 28198670 [TBL] [Abstract][Full Text] [Related]
15. Processing a 16S rRNA Sequencing Dataset with the Microbiome Helper Workflow. Douglas GM; Comeau AM; Langille MGI Methods Mol Biol; 2018; 1849():131-141. PubMed ID: 30298252 [TBL] [Abstract][Full Text] [Related]
16. Natrix: a Snakemake-based workflow for processing, clustering, and taxonomically assigning amplicon sequencing reads. Welzel M; Lange A; Heider D; Schwarz M; Freisleben B; Jensen M; Boenigk J; Beisser D BMC Bioinformatics; 2020 Nov; 21(1):526. PubMed ID: 33198651 [TBL] [Abstract][Full Text] [Related]
17. gNOMO2: a comprehensive and modular pipeline for integrated multi-omics analyses of microbiomes. Arikan M; Muth T Gigascience; 2024 Jan; 13():. PubMed ID: 38995144 [TBL] [Abstract][Full Text] [Related]
18. Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data. Aßhauer KP; Wemheuer B; Daniel R; Meinicke P Bioinformatics; 2015 Sep; 31(17):2882-4. PubMed ID: 25957349 [TBL] [Abstract][Full Text] [Related]
19. METAGENassist: a comprehensive web server for comparative metagenomics. Arndt D; Xia J; Liu Y; Zhou Y; Guo AC; Cruz JA; Sinelnikov I; Budwill K; Nesbø CL; Wishart DS Nucleic Acids Res; 2012 Jul; 40(Web Server issue):W88-95. PubMed ID: 22645318 [TBL] [Abstract][Full Text] [Related]
20. Interactive Web-Based Services for Metagenomic Data Analysis and Comparisons. Abdelsalam NA; Elshora H; El-Hadidi M Methods Mol Biol; 2023; 2649():133-174. PubMed ID: 37258861 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]