BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

157 related articles for article (PubMed ID: 32780568)

  • 1. How to Illuminate the Dark Proteome Using the Multi-omic OpenProt Resource.
    Brunet MA; Lekehal AM; Roucou X
    Curr Protoc Bioinformatics; 2020 Sep; 71(1):e103. PubMed ID: 32780568
    [TBL] [Abstract][Full Text] [Related]  

  • 2. OpenProt 2021: deeper functional annotation of the coding potential of eukaryotic genomes.
    Brunet MA; Lucier JF; Levesque M; Leblanc S; Jacques JF; Al-Saedi HRH; Guilloy N; Grenier F; Avino M; Fournier I; Salzet M; Ouangraoua A; Scott MS; Boisvert FM; Roucou X
    Nucleic Acids Res; 2021 Jan; 49(D1):D380-D388. PubMed ID: 33179748
    [TBL] [Abstract][Full Text] [Related]  

  • 3. OpenProt: a more comprehensive guide to explore eukaryotic coding potential and proteomes.
    Brunet MA; Brunelle M; Lucier JF; Delcourt V; Levesque M; Grenier F; Samandi S; Leblanc S; Aguilar JD; Dufour P; Jacques JF; Fournier I; Ouangraoua A; Scott MS; Boisvert FM; Roucou X
    Nucleic Acids Res; 2019 Jan; 47(D1):D403-D410. PubMed ID: 30299502
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Mass Spectrometry-Based Proteomics Analyses Using the OpenProt Database to Unveil Novel Proteins Translated from Non-Canonical Open Reading Frames.
    Brunet MA; Roucou X
    J Vis Exp; 2019 Apr; (146):. PubMed ID: 31033953
    [TBL] [Abstract][Full Text] [Related]  

  • 5. OpenProt 2.0 builds a path to the functional characterization of alternative proteins.
    Leblanc S; Yala F; Provencher N; Lucier JF; Levesque M; Lapointe X; Jacques JF; Fournier I; Salzet M; Ouangraoua A; Scott MS; Boisvert FM; Brunet MA; Roucou X
    Nucleic Acids Res; 2024 Jan; 52(D1):D522-D528. PubMed ID: 37956315
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Reconsidering proteomic diversity with functional investigation of small ORFs and alternative ORFs.
    Brunet MA; Leblanc S; Roucou X
    Exp Cell Res; 2020 Aug; 393(1):112057. PubMed ID: 32387289
    [TBL] [Abstract][Full Text] [Related]  

  • 7. OpenVar: functional annotation of variants in non-canonical open reading frames.
    Brunet MA; Leblanc S; Roucou X
    Cell Biosci; 2022 Aug; 12(1):130. PubMed ID: 35965322
    [TBL] [Abstract][Full Text] [Related]  

  • 8. REPARATION: ribosome profiling assisted (re-)annotation of bacterial genomes.
    Ndah E; Jonckheere V; Giess A; Valen E; Menschaert G; Van Damme P
    Nucleic Acids Res; 2017 Nov; 45(20):e168. PubMed ID: 28977509
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Common and phylogenetically widespread coding for peptides by bacterial small RNAs.
    Friedman RC; Kalkhof S; Doppelt-Azeroual O; Mueller SA; Chovancová M; von Bergen M; Schwikowski B
    BMC Genomics; 2017 Jul; 18(1):553. PubMed ID: 28732463
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Using the sORFs.Org Database.
    Olexiouk V; Menschaert G
    Curr Protoc Bioinformatics; 2019 Mar; 65(1):e68. PubMed ID: 30485709
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Small Proteins Encoded by Unannotated ORFs are Rising Stars of the Proteome, Confirming Shortcomings in Genome Annotations and Current Vision of an mRNA.
    Delcourt V; Staskevicius A; Salzet M; Fournier I; Roucou X
    Proteomics; 2018 May; 18(10):e1700058. PubMed ID: 28627015
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Non-AUG start codons: Expanding and regulating the small and alternative ORFeome.
    Cao X; Slavoff SA
    Exp Cell Res; 2020 Jun; 391(1):111973. PubMed ID: 32209305
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Identification and analysis of small proteins and short open reading frame encoded peptides in Hep3B cell.
    Wang B; Hao J; Pan N; Wang Z; Chen Y; Wan C
    J Proteomics; 2021 Jan; 230():103965. PubMed ID: 32891891
    [TBL] [Abstract][Full Text] [Related]  

  • 14. PROTEOFORMER: deep proteome coverage through ribosome profiling and MS integration.
    Crappé J; Ndah E; Koch A; Steyaert S; Gawron D; De Keulenaer S; De Meester E; De Meyer T; Van Criekinge W; Van Damme P; Menschaert G
    Nucleic Acids Res; 2015 Mar; 43(5):e29. PubMed ID: 25510491
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Discovery and annotation of small proteins using genomics, proteomics, and computational approaches.
    Yang X; Tschaplinski TJ; Hurst GB; Jawdy S; Abraham PE; Lankford PK; Adams RM; Shah MB; Hettich RL; Lindquist E; Kalluri UC; Gunter LE; Pennacchio C; Tuskan GA
    Genome Res; 2011 Apr; 21(4):634-41. PubMed ID: 21367939
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Pinstripe: a suite of programs for integrating transcriptomic and proteomic datasets identifies novel proteins and improves differentiation of protein-coding and non-coding genes.
    Gascoigne DK; Cheetham SW; Cattenoz PB; Clark MB; Amaral PP; Taft RJ; Wilhelm D; Dinger ME; Mattick JS
    Bioinformatics; 2012 Dec; 28(23):3042-50. PubMed ID: 23044541
    [TBL] [Abstract][Full Text] [Related]  

  • 17. The Protein Coded by a Short Open Reading Frame, Not by the Annotated Coding Sequence, Is the Main Gene Product of the Dual-Coding Gene
    Delcourt V; Brunelle M; Roy AV; Jacques JF; Salzet M; Fournier I; Roucou X
    Mol Cell Proteomics; 2018 Dec; 17(12):2402-2411. PubMed ID: 30181344
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Multi-omics Visualization Platform: An extensible Galaxy plug-in for multi-omics data visualization and exploration.
    McGowan T; Johnson JE; Kumar P; Sajulga R; Mehta S; Jagtap PD; Griffin TJ
    Gigascience; 2020 Apr; 9(4):. PubMed ID: 32236523
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Direct detection of alternative open reading frames translation products in human significantly expands the proteome.
    Vanderperre B; Lucier JF; Bissonnette C; Motard J; Tremblay G; Vanderperre S; Wisztorski M; Salzet M; Boisvert FM; Roucou X
    PLoS One; 2013; 8(8):e70698. PubMed ID: 23950983
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Combining in silico prediction and ribosome profiling in a genome-wide search for novel putatively coding sORFs.
    Crappé J; Van Criekinge W; Trooskens G; Hayakawa E; Luyten W; Baggerman G; Menschaert G
    BMC Genomics; 2013 Sep; 14():648. PubMed ID: 24059539
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.