185 related articles for article (PubMed ID: 32787954)
21. HiCcompare: an R-package for joint normalization and comparison of HI-C datasets.
Stansfield JC; Cresswell KG; Vladimirov VI; Dozmorov MG
BMC Bioinformatics; 2018 Jul; 19(1):279. PubMed ID: 30064362
[TBL] [Abstract][Full Text] [Related]
22. Enhancing Hi-C contact matrices for loop detection with Capricorn: a multiview diffusion model.
Fang T; Liu Y; Woicik A; Lu M; Jha A; Wang X; Li G; Hristov B; Liu Z; Xu H; Noble WS; Wang S
Bioinformatics; 2024 Jun; 40(Supplement_1):i471-i480. PubMed ID: 38940142
[TBL] [Abstract][Full Text] [Related]
23. Read-Split-Run: an improved bioinformatics pipeline for identification of genome-wide non-canonical spliced regions using RNA-Seq data.
Bai Y; Kinne J; Donham B; Jiang F; Ding L; Hassler JR; Kaufman RJ
BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):503. PubMed ID: 27556805
[TBL] [Abstract][Full Text] [Related]
24. seqQscorer: automated quality control of next-generation sequencing data using machine learning.
Albrecht S; Sprang M; Andrade-Navarro MA; Fontaine JF
Genome Biol; 2021 Mar; 22(1):75. PubMed ID: 33673854
[TBL] [Abstract][Full Text] [Related]
25. OncoBase: a platform for decoding regulatory somatic mutations in human cancers.
Li X; Shi L; Wang Y; Zhong J; Zhao X; Teng H; Shi X; Yang H; Ruan S; Li M; Sun ZS; Zhan Q; Mao F
Nucleic Acids Res; 2019 Jan; 47(D1):D1044-D1055. PubMed ID: 30445567
[TBL] [Abstract][Full Text] [Related]
26. MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments.
Juric I; Yu M; Abnousi A; Raviram R; Fang R; Zhao Y; Zhang Y; Qiu Y; Yang Y; Li Y; Ren B; Hu M
PLoS Comput Biol; 2019 Apr; 15(4):e1006982. PubMed ID: 30986246
[TBL] [Abstract][Full Text] [Related]
27. Spring Model - Chromatin Modeling Tool Based on OpenMM.
Kadlof M; Rozycka J; Plewczynski D
Methods; 2020 Oct; 181-182():62-69. PubMed ID: 31790732
[TBL] [Abstract][Full Text] [Related]
28. MHiC, an integrated user-friendly tool for the identification and visualization of significant interactions in Hi-C data.
Khakmardan S; Rezvani M; Pouyan AA; Fateh M; Alinejad-Rokny H
BMC Genomics; 2020 Mar; 21(1):225. PubMed ID: 32164554
[TBL] [Abstract][Full Text] [Related]
29. Identifying statistically significant chromatin contacts from Hi-C data with FitHiC2.
Kaul A; Bhattacharyya S; Ay F
Nat Protoc; 2020 Mar; 15(3):991-1012. PubMed ID: 31980751
[TBL] [Abstract][Full Text] [Related]
30. Methods for comparative ChIA-PET and Hi-C data analysis.
Capurso D; Tang Z; Ruan Y
Methods; 2020 Jan; 170():69-74. PubMed ID: 31629084
[TBL] [Abstract][Full Text] [Related]
31. Identification of significant chromatin contacts from HiChIP data by FitHiChIP.
Bhattacharyya S; Chandra V; Vijayanand P; Ay F
Nat Commun; 2019 Sep; 10(1):4221. PubMed ID: 31530818
[TBL] [Abstract][Full Text] [Related]
32. Identifying estrogen receptor alpha target genes using integrated computational genomics and chromatin immunoprecipitation microarray.
Jin VX; Leu YW; Liyanarachchi S; Sun H; Fan M; Nephew KP; Huang TH; Davuluri RV
Nucleic Acids Res; 2004; 32(22):6627-35. PubMed ID: 15608294
[TBL] [Abstract][Full Text] [Related]
33. Quantitative prediction of enhancer-promoter interactions.
Belokopytova PS; Nuriddinov MA; Mozheiko EA; Fishman D; Fishman V
Genome Res; 2020 Jan; 30(1):72-84. PubMed ID: 31804952
[TBL] [Abstract][Full Text] [Related]
34. CscoreTool: fast Hi-C compartment analysis at high resolution.
Zheng X; Zheng Y
Bioinformatics; 2018 May; 34(9):1568-1570. PubMed ID: 29244056
[TBL] [Abstract][Full Text] [Related]
35. Generative modeling of multi-mapping reads with mHi-C advances analysis of Hi-C studies.
Zheng Y; Ay F; Keles S
Elife; 2019 Jan; 8():. PubMed ID: 30702424
[TBL] [Abstract][Full Text] [Related]
36. Computational methods for predicting 3D genomic organization from high-resolution chromosome conformation capture data.
MacKay K; Kusalik A
Brief Funct Genomics; 2020 Jul; 19(4):292-308. PubMed ID: 32353112
[TBL] [Abstract][Full Text] [Related]
37. Analysis of Enhancer-Promoter Interactions using CAGE and RADICL-Seq Technologies.
Bonetti A; Kwon AT; Arner E; Carninci P
Methods Mol Biol; 2021; 2351():201-210. PubMed ID: 34382191
[TBL] [Abstract][Full Text] [Related]
38. nPhase: an accurate and contiguous phasing method for polyploids.
Abou Saada O; Tsouris A; Eberlein C; Friedrich A; Schacherer J
Genome Biol; 2021 Apr; 22(1):126. PubMed ID: 33926549
[TBL] [Abstract][Full Text] [Related]
39. Multifaceted Hi-C benchmarking: what makes a difference in chromosome-scale genome scaffolding?
Kadota M; Nishimura O; Miura H; Tanaka K; Hiratani I; Kuraku S
Gigascience; 2020 Jan; 9(1):. PubMed ID: 31919520
[TBL] [Abstract][Full Text] [Related]
40. TSSFinder-fast and accurate ab initio prediction of the core promoter in eukaryotic genomes.
de Medeiros Oliveira M; Bonadio I; Lie de Melo A; Mendes Souza G; Durham AM
Brief Bioinform; 2021 Nov; 22(6):. PubMed ID: 34050351
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
