292 related articles for article (PubMed ID: 32788623)
21. Nanopore long-read-only metagenomics enables complete and high-quality genome reconstruction from mock and complex metagenomes.
Liu L; Yang Y; Deng Y; Zhang T
Microbiome; 2022 Dec; 10(1):209. PubMed ID: 36457010
[TBL] [Abstract][Full Text] [Related]
22. Homopolish: a method for the removal of systematic errors in nanopore sequencing by homologous polishing.
Huang YT; Liu PY; Shih PW
Genome Biol; 2021 Mar; 22(1):95. PubMed ID: 33789731
[TBL] [Abstract][Full Text] [Related]
23. Long-read based de novo assembly of low-complexity metagenome samples results in finished genomes and reveals insights into strain diversity and an active phage system.
Somerville V; Lutz S; Schmid M; Frei D; Moser A; Irmler S; Frey JE; Ahrens CH
BMC Microbiol; 2019 Jun; 19(1):143. PubMed ID: 31238873
[TBL] [Abstract][Full Text] [Related]
24. Oxford Nanopore R10.4 long-read sequencing enables the generation of near-finished bacterial genomes from pure cultures and metagenomes without short-read or reference polishing.
Sereika M; Kirkegaard RH; Karst SM; Michaelsen TY; Sørensen EA; Wollenberg RD; Albertsen M
Nat Methods; 2022 Jul; 19(7):823-826. PubMed ID: 35789207
[TBL] [Abstract][Full Text] [Related]
25. Comparison of long- and short-read metagenomic assembly for low-abundance species and resistance genes.
Yorki S; Shea T; Cuomo CA; Walker BJ; LaRocque RC; Manson AL; Earl AM; Worby CJ
Brief Bioinform; 2023 Mar; 24(2):. PubMed ID: 36804804
[TBL] [Abstract][Full Text] [Related]
26. Comparison of De Novo Assembly Strategies for Bacterial Genomes.
Zhang P; Jiang D; Wang Y; Yao X; Luo Y; Yang Z
Int J Mol Sci; 2021 Jul; 22(14):. PubMed ID: 34299288
[TBL] [Abstract][Full Text] [Related]
27. Generation and application of pseudo-long reads for metagenome assembly.
Sim M; Lee J; Wy S; Park N; Lee D; Kwon D; Kim J
Gigascience; 2022 May; 11():. PubMed ID: 35579554
[TBL] [Abstract][Full Text] [Related]
28. Comparison of Illumina versus Nanopore 16S rRNA Gene Sequencing of the Human Nasal Microbiota.
Heikema AP; Horst-Kreft D; Boers SA; Jansen R; Hiltemann SD; de Koning W; Kraaij R; de Ridder MAJ; van Houten CB; Bont LJ; Stubbs AP; Hays JP
Genes (Basel); 2020 Sep; 11(9):. PubMed ID: 32967250
[TBL] [Abstract][Full Text] [Related]
29. Genome assembly using Nanopore-guided long and error-free DNA reads.
Madoui MA; Engelen S; Cruaud C; Belser C; Bertrand L; Alberti A; Lemainque A; Wincker P; Aury JM
BMC Genomics; 2015 Apr; 16(1):327. PubMed ID: 25927464
[TBL] [Abstract][Full Text] [Related]
30. Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes.
Olson ND; Treangen TJ; Hill CM; Cepeda-Espinoza V; Ghurye J; Koren S; Pop M
Brief Bioinform; 2019 Jul; 20(4):1140-1150. PubMed ID: 28968737
[TBL] [Abstract][Full Text] [Related]
31. The long and short of it: benchmarking viromics using Illumina, Nanopore and PacBio sequencing technologies.
Cook R; Brown N; Rihtman B; Michniewski S; Redgwell T; Clokie M; Stekel DJ; Chen Y; Scanlan DJ; Hobman JL; Nelson A; Jones MA; Smith D; Millard A
Microb Genom; 2024 Feb; 10(2):. PubMed ID: 38376377
[TBL] [Abstract][Full Text] [Related]
32. Using Nanopore Sequencing to Obtain Complete Bacterial Genomes from Saliva Samples.
Baker JL
mSystems; 2022 Oct; 7(5):e0049122. PubMed ID: 35993719
[TBL] [Abstract][Full Text] [Related]
33. Benchmarking hybrid assembly approaches for genomic analyses of bacterial pathogens using Illumina and Oxford Nanopore sequencing.
Chen Z; Erickson DL; Meng J
BMC Genomics; 2020 Sep; 21(1):631. PubMed ID: 32928108
[TBL] [Abstract][Full Text] [Related]
34. Charting the complexity of the activated sludge microbiome through a hybrid sequencing strategy.
Liu L; Wang Y; Yang Y; Wang D; Cheng SH; Zheng C; Zhang T
Microbiome; 2021 Oct; 9(1):205. PubMed ID: 34649602
[TBL] [Abstract][Full Text] [Related]
35. Evaluation of the accuracy of bacterial genome reconstruction with Oxford Nanopore R10.4.1 long-read-only sequencing.
Sanderson ND; Hopkins KMV; Colpus M; Parker M; Lipworth S; Crook D; Stoesser N
Microb Genom; 2024 May; 10(5):. PubMed ID: 38713194
[TBL] [Abstract][Full Text] [Related]
36. Critical evaluation of short, long, and hybrid assembly for contextual analysis of antibiotic resistance genes in complex environmental metagenomes.
Brown CL; Keenum IM; Dai D; Zhang L; Vikesland PJ; Pruden A
Sci Rep; 2021 Feb; 11(1):3753. PubMed ID: 33580146
[TBL] [Abstract][Full Text] [Related]
37. Intestinal microbiota domination under extreme selective pressures characterized by metagenomic read cloud sequencing and assembly.
Kang JB; Siranosian BA; Moss EL; Banaei N; Andermann TM; Bhatt AS
BMC Bioinformatics; 2019 Dec; 20(Suppl 16):585. PubMed ID: 31787070
[TBL] [Abstract][Full Text] [Related]
38. Species classifier choice is a key consideration when analysing low-complexity food microbiome data.
Walsh AM; Crispie F; O'Sullivan O; Finnegan L; Claesson MJ; Cotter PD
Microbiome; 2018 Mar; 6(1):50. PubMed ID: 29554948
[TBL] [Abstract][Full Text] [Related]
39. Nanopore sequencing technology and tools for genome assembly: computational analysis of the current state, bottlenecks and future directions.
Senol Cali D; Kim JS; Ghose S; Alkan C; Mutlu O
Brief Bioinform; 2019 Jul; 20(4):1542-1559. PubMed ID: 29617724
[TBL] [Abstract][Full Text] [Related]
40. Nanopore Long Read DNA Sequencing of Protozoan Parasites: Hybrid Genome Assembly of Trypanosoma cruzi.
Díaz-Viraqué F; Greif G; Berná L; Robello C
Methods Mol Biol; 2021; 2369():3-13. PubMed ID: 34313980
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]