These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

224 related articles for article (PubMed ID: 32804935)

  • 1. Deconvolving the contributions of cell-type heterogeneity on cortical gene expression.
    Patrick E; Taga M; Ergun A; Ng B; Casazza W; Cimpean M; Yung C; Schneider JA; Bennett DA; Gaiteri C; De Jager PL; Bradshaw EM; Mostafavi S
    PLoS Comput Biol; 2020 Aug; 16(8):e1008120. PubMed ID: 32804935
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Deconvolution from bulk gene expression by leveraging sample-wise and gene-wise similarities and single-cell RNA-Seq data.
    Wang C; Lin Y; Li S; Guan J
    BMC Genomics; 2024 Sep; 25(1):875. PubMed ID: 39294558
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Assessing transcriptomic heterogeneity of single-cell RNASeq data by bulk-level gene expression data.
    Tiong KL; Luzhbin D; Yeang CH
    BMC Bioinformatics; 2024 Jun; 25(1):209. PubMed ID: 38867193
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Evaluating performance and applications of sample-wise cell deconvolution methods on human brain transcriptomic data.
    Dai R; Chu T; Zhang M; Wang X; Jourdon A; Wu F; Mariani J; Vaccarino FM; Lee D; Fullard JF; Hoffman GE; Roussos P; Wang Y; Wang X; Pinto D; Wang SH; Zhang C; ; Chen C; Liu C
    Sci Adv; 2024 May; 10(21):eadh2588. PubMed ID: 38781336
    [TBL] [Abstract][Full Text] [Related]  

  • 5. MuSiC2: cell-type deconvolution for multi-condition bulk RNA-seq data.
    Fan J; Lyu Y; Zhang Q; Wang X; Li M; Xiao R
    Brief Bioinform; 2022 Nov; 23(6):. PubMed ID: 36208175
    [TBL] [Abstract][Full Text] [Related]  

  • 6. NNICE: a deep quantile neural network algorithm for expression deconvolution.
    Jin YW; Hu P; Liu Q
    Sci Rep; 2024 Jun; 14(1):14040. PubMed ID: 38890415
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Cellular deconvolution of GTEx tissues powers discovery of disease and cell-type associated regulatory variants.
    Donovan MKR; D'Antonio-Chronowska A; D'Antonio M; Frazer KA
    Nat Commun; 2020 Feb; 11(1):955. PubMed ID: 32075962
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Comprehensive evaluation of deconvolution methods for human brain gene expression.
    Sutton GJ; Poppe D; Simmons RK; Walsh K; Nawaz U; Lister R; Gagnon-Bartsch JA; Voineagu I
    Nat Commun; 2022 Mar; 13(1):1358. PubMed ID: 35292647
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Bayesian estimation of cell type-specific gene expression with prior derived from single-cell data.
    Wang J; Roeder K; Devlin B
    Genome Res; 2021 Oct; 31(10):1807-1818. PubMed ID: 33837133
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Not every estimate counts - evaluation of cell composition estimation approaches in brain bulk tissue data.
    Toker L; Nido GS; Tzoulis C
    Genome Med; 2023 Jun; 15(1):41. PubMed ID: 37287013
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Optimized design of single-cell RNA sequencing experiments for cell-type-specific eQTL analysis.
    Mandric I; Schwarz T; Majumdar A; Hou K; Briscoe L; Perez R; Subramaniam M; Hafemeister C; Satija R; Ye CJ; Pasaniuc B; Halperin E
    Nat Commun; 2020 Oct; 11(1):5504. PubMed ID: 33127880
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Challenges and opportunities to computationally deconvolve heterogeneous tissue with varying cell sizes using single-cell RNA-sequencing datasets.
    Maden SK; Kwon SH; Huuki-Myers LA; Collado-Torres L; Hicks SC; Maynard KR
    Genome Biol; 2023 Dec; 24(1):288. PubMed ID: 38098055
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Detecting cell-type-specific allelic expression imbalance by integrative analysis of bulk and single-cell RNA sequencing data.
    Fan J; Wang X; Xiao R; Li M
    PLoS Genet; 2021 Mar; 17(3):e1009080. PubMed ID: 33661921
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Accurate estimation of cell-type composition from gene expression data.
    Tsoucas D; Dong R; Chen H; Zhu Q; Guo G; Yuan GC
    Nat Commun; 2019 Jul; 10(1):2975. PubMed ID: 31278265
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Cell-Type Heterogeneity in Adipose Tissue Is Associated with Complex Traits and Reveals Disease-Relevant Cell-Specific eQTLs.
    Glastonbury CA; Couto Alves A; El-Sayed Moustafa JS; Small KS
    Am J Hum Genet; 2019 Jun; 104(6):1013-1024. PubMed ID: 31130283
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Computational deconvolution of transcriptomics data from mixed cell populations.
    Avila Cobos F; Vandesompele J; Mestdagh P; De Preter K
    Bioinformatics; 2018 Jun; 34(11):1969-1979. PubMed ID: 29351586
    [TBL] [Abstract][Full Text] [Related]  

  • 17. CDSeqR: fast complete deconvolution for gene expression data from bulk tissues.
    Kang K; Huang C; Li Y; Umbach DM; Li L
    BMC Bioinformatics; 2021 May; 22(1):262. PubMed ID: 34030626
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Multimodal joint deconvolution and integrative signature selection in proteomics.
    Pan Y; Wang X; Sun J; Liu C; Peng J; Li Q
    Commun Biol; 2024 Apr; 7(1):493. PubMed ID: 38658803
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Single-Cell Deconvolution of Head and Neck Squamous Cell Carcinoma.
    Qi Z; Liu Y; Mints M; Mullins R; Sample R; Law T; Barrett T; Mazul AL; Jackson RS; Kang SY; Pipkorn P; Parikh AS; Tirosh I; Dougherty J; Puram SV
    Cancers (Basel); 2021 Mar; 13(6):. PubMed ID: 33799782
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Effective methods for bulk RNA-seq deconvolution using scnRNA-seq transcriptomes.
    Cobos FA; Panah MJN; Epps J; Long X; Man TK; Chiu HS; Chomsky E; Kiner E; Krueger MJ; di Bernardo D; Voloch L; Molenaar J; van Hooff SR; Westermann F; Jansky S; Redell ML; Mestdagh P; Sumazin P
    Genome Biol; 2023 Aug; 24(1):177. PubMed ID: 37528411
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.