These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
181 related articles for article (PubMed ID: 32817072)
1. TransBorrow: genome-guided transcriptome assembly by borrowing assemblies from different assemblers. Yu T; Mu Z; Fang Z; Liu X; Gao X; Liu J Genome Res; 2020 Aug; 30(8):1181-1190. PubMed ID: 32817072 [TBL] [Abstract][Full Text] [Related]
2. RNA-Bloom enables reference-free and reference-guided sequence assembly for single-cell transcriptomes. Nip KM; Chiu R; Yang C; Chu J; Mohamadi H; Warren RL; Birol I Genome Res; 2020 Aug; 30(8):1191-1200. PubMed ID: 32817073 [TBL] [Abstract][Full Text] [Related]
3. TransComb: genome-guided transcriptome assembly via combing junctions in splicing graphs. Liu J; Yu T; Jiang T; Li G Genome Biol; 2016 Oct; 17(1):213. PubMed ID: 27760567 [TBL] [Abstract][Full Text] [Related]
4. BinPacker: Packing-Based De Novo Transcriptome Assembly from RNA-seq Data. Liu J; Li G; Chang Z; Yu T; Liu B; McMullen R; Chen P; Huang X PLoS Comput Biol; 2016 Feb; 12(2):e1004772. PubMed ID: 26894997 [TBL] [Abstract][Full Text] [Related]
5. Comparative study of de novo assembly and genome-guided assembly strategies for transcriptome reconstruction based on RNA-Seq. Lu B; Zeng Z; Shi T Sci China Life Sci; 2013 Feb; 56(2):143-55. PubMed ID: 23393030 [TBL] [Abstract][Full Text] [Related]
6. Accurate inference of isoforms from multiple sample RNA-Seq data. Tasnim M; Ma S; Yang EW; Jiang T; Li W BMC Genomics; 2015; 16 Suppl 2(Suppl 2):S15. PubMed ID: 25708199 [TBL] [Abstract][Full Text] [Related]
7. rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data. Bushmanova E; Antipov D; Lapidus A; Prjibelski AD Gigascience; 2019 Sep; 8(9):. PubMed ID: 31494669 [TBL] [Abstract][Full Text] [Related]
10. RNA-Seq in Nonmodel Organisms. Chalifa-Caspi V Methods Mol Biol; 2021; 2243():143-167. PubMed ID: 33606257 [TBL] [Abstract][Full Text] [Related]
11. Pincho: A Modular Approach to High Quality De Novo Transcriptomics. Ortiz R; Gera P; Rivera C; Santos JC Genes (Basel); 2021 Jun; 12(7):. PubMed ID: 34206353 [TBL] [Abstract][Full Text] [Related]
12. IsoTree: A New Framework for de novo Transcriptome Assembly from RNA-seq Reads. Zhao J; Feng H; Zhu D; Zhang C; Xu Y IEEE/ACM Trans Comput Biol Bioinform; 2020; 17(3):938-948. PubMed ID: 29994455 [TBL] [Abstract][Full Text] [Related]
13. Sequence comparative analysis using networks: software for evaluating de novo transcript assembly from next-generation sequencing. Misner I; Bicep C; Lopez P; Halary S; Bapteste E; Lane CE Mol Biol Evol; 2013 Aug; 30(8):1975-86. PubMed ID: 23666209 [TBL] [Abstract][Full Text] [Related]
14. Comparative performance of transcriptome assembly methods for non-model organisms. Huang X; Chen XG; Armbruster PA BMC Genomics; 2016 Jul; 17():523. PubMed ID: 27464550 [TBL] [Abstract][Full Text] [Related]
15. Transcript Identification Through Long-Read Sequencing. Seki M; Oka M; Xu L; Suzuki A; Suzuki Y Methods Mol Biol; 2021; 2284():531-541. PubMed ID: 33835462 [TBL] [Abstract][Full Text] [Related]
16. iPAC: a genome-guided assembler of isoforms via phasing and combing paths. Yu T; Liu J; Gao X; Li G Bioinformatics; 2020 May; 36(9):2712-2717. PubMed ID: 31985799 [TBL] [Abstract][Full Text] [Related]
17. Analysis of RNA Sequencing Data Using CLC Genomics Workbench. Liu CH; Di YP Methods Mol Biol; 2020; 2102():61-113. PubMed ID: 31989550 [TBL] [Abstract][Full Text] [Related]
18. Bridger: a new framework for de novo transcriptome assembly using RNA-seq data. Chang Z; Li G; Liu J; Zhang Y; Ashby C; Liu D; Cramer CL; Huang X Genome Biol; 2015 Feb; 16(1):30. PubMed ID: 25723335 [TBL] [Abstract][Full Text] [Related]
19. TransRef enables accurate transcriptome assembly by redefining accurate neo-splicing graphs. Yu T; Han R; Fang Z; Mu Z; Zheng H; Liu J Brief Bioinform; 2021 Nov; 22(6):. PubMed ID: 34254977 [TBL] [Abstract][Full Text] [Related]
20. RefShannon: A genome-guided transcriptome assembler using sparse flow decomposition. Mao S; Pachter L; Tse D; Kannan S PLoS One; 2020; 15(6):e0232946. PubMed ID: 32484809 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]