198 related articles for article (PubMed ID: 32817236)
1. Detection of simple and complex de novo mutations with multiple reference sequences.
Garimella KV; Iqbal Z; Krause MA; Campino S; Kekre M; Drury E; Kwiatkowski D; Sá JM; Wellems TE; McVean G
Genome Res; 2020 Aug; 30(8):1154-1169. PubMed ID: 32817236
[TBL] [Abstract][Full Text] [Related]
2. NovoGraph: Human genome graph construction from multiple long-read
Biederstedt E; Oliver JC; Hansen NF; Jajoo A; Dunn N; Olson A; Busby B; Dilthey AT
F1000Res; 2018; 7():1391. PubMed ID: 30613392
[TBL] [Abstract][Full Text] [Related]
3. The present and future of de novo whole-genome assembly.
Sohn JI; Nam JW
Brief Bioinform; 2018 Jan; 19(1):23-40. PubMed ID: 27742661
[TBL] [Abstract][Full Text] [Related]
4. Integrating long-range connectivity information into de Bruijn graphs.
Turner I; Garimella KV; Iqbal Z; McVean G
Bioinformatics; 2018 Aug; 34(15):2556-2565. PubMed ID: 29554215
[TBL] [Abstract][Full Text] [Related]
5. High-throughput 454 resequencing for allele discovery and recombination mapping in Plasmodium falciparum.
Samarakoon U; Regier A; Tan A; Desany BA; Collins B; Tan JC; Emrich SJ; Ferdig MT
BMC Genomics; 2011 Feb; 12():116. PubMed ID: 21324207
[TBL] [Abstract][Full Text] [Related]
6. Accurate long-read de novo assembly evaluation with Inspector.
Chen Y; Zhang Y; Wang AY; Gao M; Chong Z
Genome Biol; 2021 Nov; 22(1):312. PubMed ID: 34775997
[TBL] [Abstract][Full Text] [Related]
7. RResolver: efficient short-read repeat resolution within ABySS.
Nikolić V; Afshinfard A; Chu J; Wong J; Coombe L; Nip KM; Warren RL; Birol I
BMC Bioinformatics; 2022 Jun; 23(1):246. PubMed ID: 35729491
[TBL] [Abstract][Full Text] [Related]
8. Assembly of long error-prone reads using de Bruijn graphs.
Lin Y; Yuan J; Kolmogorov M; Shen MW; Chaisson M; Pevzner PA
Proc Natl Acad Sci U S A; 2016 Dec; 113(52):E8396-E8405. PubMed ID: 27956617
[TBL] [Abstract][Full Text] [Related]
9. Longshot enables accurate variant calling in diploid genomes from single-molecule long read sequencing.
Edge P; Bansal V
Nat Commun; 2019 Oct; 10(1):4660. PubMed ID: 31604920
[TBL] [Abstract][Full Text] [Related]
10. Precise detection of de novo single nucleotide variants in human genomes.
Gómez-Romero L; Palacios-Flores K; Reyes J; García D; Boege M; Dávila G; Flores M; Schatz MC; Palacios R
Proc Natl Acad Sci U S A; 2018 May; 115(21):5516-5521. PubMed ID: 29735690
[TBL] [Abstract][Full Text] [Related]
11. Population-scale detection of non-reference sequence variants using colored de Bruijn graphs.
Krannich T; White WTJ; Niehus S; Holley G; Halldórsson BV; Kehr B
Bioinformatics; 2022 Jan; 38(3):604-611. PubMed ID: 34726732
[TBL] [Abstract][Full Text] [Related]
12. Complete telomere-to-telomere de novo assembly of the Plasmodium falciparum genome through long-read (>11 kb), single molecule, real-time sequencing.
Vembar SS; Seetin M; Lambert C; Nattestad M; Schatz MC; Baybayan P; Scherf A; Smith ML
DNA Res; 2016 Aug; 23(4):339-51. PubMed ID: 27345719
[TBL] [Abstract][Full Text] [Related]
13. Assembly of highly repetitive genomes using short reads: the genome of discrete typing unit III Trypanosoma cruzi strain 231.
Baptista RP; Reis-Cunha JL; DeBarry JD; Chiari E; Kissinger JC; Bartholomeu DC; Macedo AM
Microb Genom; 2018 Apr; 4(4):. PubMed ID: 29442617
[TBL] [Abstract][Full Text] [Related]
14. TraRECo: a greedy approach based de novo transcriptome assembler with read error correction using consensus matrix.
Yoon S; Kim D; Kang K; Park WJ
BMC Genomics; 2018 Sep; 19(1):653. PubMed ID: 30180798
[TBL] [Abstract][Full Text] [Related]
15. Efficient Colored de Bruijn Graph for Indexing Reads.
Hasegawa N; Shimizu K
J Comput Biol; 2023 Jun; 30(6):648-662. PubMed ID: 37115583
[TBL] [Abstract][Full Text] [Related]
16. Nanopore sequencing and full genome de novo assembly of human cytomegalovirus TB40/E reveals clonal diversity and structural variations.
Karamitros T; van Wilgenburg B; Wills M; Klenerman P; Magiorkinis G
BMC Genomics; 2018 Aug; 19(1):577. PubMed ID: 30068288
[TBL] [Abstract][Full Text] [Related]
17. Efficient detection and assembly of non-reference DNA sequences with synthetic long reads.
Meleshko D; Yang R; Marks P; Williams S; Hajirasouliha I
Nucleic Acids Res; 2022 Oct; 50(18):e108. PubMed ID: 35924489
[TBL] [Abstract][Full Text] [Related]
18. De novo assembly and genotyping of variants using colored de Bruijn graphs.
Iqbal Z; Caccamo M; Turner I; Flicek P; McVean G
Nat Genet; 2012 Jan; 44(2):226-32. PubMed ID: 22231483
[TBL] [Abstract][Full Text] [Related]
19. RepLong: de novo repeat identification using long read sequencing data.
Guo R; Li YR; He S; Ou-Yang L; Sun Y; Zhu Z
Bioinformatics; 2018 Apr; 34(7):1099-1107. PubMed ID: 29126180
[TBL] [Abstract][Full Text] [Related]
20. Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.
Wick RR; Judd LM; Gorrie CL; Holt KE
PLoS Comput Biol; 2017 Jun; 13(6):e1005595. PubMed ID: 28594827
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
