BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

261 related articles for article (PubMed ID: 32824429)

  • 1. Assembling Reads Improves Taxonomic Classification of Species.
    Tran Q; Phan V
    Genes (Basel); 2020 Aug; 11(8):. PubMed ID: 32824429
    [TBL] [Abstract][Full Text] [Related]  

  • 2. MetaCluster-TA: taxonomic annotation for metagenomic data based on assembly-assisted binning.
    Wang Y; Leung H; Yiu S; Chin F
    BMC Genomics; 2014; 15 Suppl 1(Suppl 1):S12. PubMed ID: 24564377
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets.
    Portik DM; Brown CT; Pierce-Ward NT
    BMC Bioinformatics; 2022 Dec; 23(1):541. PubMed ID: 36513983
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Selection of marker genes for genetic barcoding of microorganisms and binning of metagenomic reads by Barcoder software tools.
    Rotimi AM; Pierneef R; Reva ON
    BMC Bioinformatics; 2018 Aug; 19(1):309. PubMed ID: 30165813
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Generation and application of pseudo-long reads for metagenome assembly.
    Sim M; Lee J; Wy S; Park N; Lee D; Kwon D; Kim J
    Gigascience; 2022 May; 11():. PubMed ID: 35579554
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Introduction to the Analysis of Environmental Sequences: Metagenomics with MEGAN.
    Bağcı C; Beier S; Górska A; Huson DH
    Methods Mol Biol; 2019; 1910():591-604. PubMed ID: 31278678
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Improved Assembly of Metagenome-Assembled Genomes and Viruses in Tibetan Saline Lake Sediment by HiFi Metagenomic Sequencing.
    Tao Y; Xun F; Zhao C; Mao Z; Li B; Xing P; Wu QL
    Microbiol Spectr; 2023 Feb; 11(1):e0332822. PubMed ID: 36475839
    [TBL] [Abstract][Full Text] [Related]  

  • 8. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
    Brown BL; Watson M; Minot SS; Rivera MC; Franklin RB
    Gigascience; 2017 Mar; 6(3):1-10. PubMed ID: 28327976
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Deep learning models for bacteria taxonomic classification of metagenomic data.
    Fiannaca A; La Paglia L; La Rosa M; Lo Bosco G; Renda G; Rizzo R; Gaglio S; Urso A
    BMC Bioinformatics; 2018 Jul; 19(Suppl 7):198. PubMed ID: 30066629
    [TBL] [Abstract][Full Text] [Related]  

  • 10. MetaObtainer: A Tool for Obtaining Specified Species from Metagenomic Reads of Next-generation Sequencing.
    Pan W; Chen B; Xu Y
    Interdiscip Sci; 2015 Dec; 7(4):405-13. PubMed ID: 26293485
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Metagenome Assembly and Contig Assignment.
    Zhang Q
    Methods Mol Biol; 2018; 1849():179-192. PubMed ID: 30298255
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Improving Bacterial Metagenomic Research through Long-Read Sequencing.
    Greenman N; Hassouneh SA; Abdelli LS; Johnston C; Azarian T
    Microorganisms; 2024 May; 12(5):. PubMed ID: 38792764
    [TBL] [Abstract][Full Text] [Related]  

  • 13. k-SLAM: accurate and ultra-fast taxonomic classification and gene identification for large metagenomic data sets.
    Ainsworth D; Sternberg MJE; Raczy C; Butcher SA
    Nucleic Acids Res; 2017 Feb; 45(4):1649-1656. PubMed ID: 27965413
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Exploiting topic modeling to boost metagenomic reads binning.
    Zhang R; Cheng Z; Guan J; Zhou S
    BMC Bioinformatics; 2015; 16 Suppl 5(Suppl 5):S2. PubMed ID: 25859745
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Genome-resolved metagenomics using environmental and clinical samples.
    Kayani MUR; Huang W; Feng R; Chen L
    Brief Bioinform; 2021 Sep; 22(5):. PubMed ID: 33758906
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Unbiased Taxonomic Annotation of Metagenomic Samples.
    Fosso B; Pesole G; Rosselló F; Valiente G
    J Comput Biol; 2018 Mar; 25(3):348-360. PubMed ID: 29028181
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Metagenomic taxonomic classification using extreme learning machines.
    Rasheed Z; Rangwala H
    J Bioinform Comput Biol; 2012 Oct; 10(5):1250015. PubMed ID: 22849369
    [TBL] [Abstract][Full Text] [Related]  

  • 18. From defaults to databases: parameter and database choice dramatically impact the performance of metagenomic taxonomic classification tools.
    Wright RJ; Comeau AM; Langille MGI
    Microb Genom; 2023 Mar; 9(3):. PubMed ID: 36867161
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes.
    Olson ND; Treangen TJ; Hill CM; Cepeda-Espinoza V; Ghurye J; Koren S; Pop M
    Brief Bioinform; 2019 Jul; 20(4):1140-1150. PubMed ID: 28968737
    [TBL] [Abstract][Full Text] [Related]  

  • 20. InteMAP: Integrated metagenomic assembly pipeline for NGS short reads.
    Lai B; Wang F; Wang X; Duan L; Zhu H
    BMC Bioinformatics; 2015 Aug; 16():244. PubMed ID: 26250558
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 14.