These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
2. Variant Library Annotation Tool (VaLiAnT): an oligonucleotide library design and annotation tool for saturation genome editing and other deep mutational scanning experiments. Barbon L; Offord V; Radford EJ; Butler AP; Gerety SS; Adams DJ; Tan HK; Waters AJ Bioinformatics; 2022 Jan; 38(4):892-899. PubMed ID: 34791067 [TBL] [Abstract][Full Text] [Related]
3. SYNBADm: a tool for optimization-based automated design of synthetic gene circuits. Otero-Muras I; Henriques D; Banga JR Bioinformatics; 2016 Nov; 32(21):3360-3362. PubMed ID: 27402908 [TBL] [Abstract][Full Text] [Related]
4. Tysserand-fast and accurate reconstruction of spatial networks from bioimages. Coullomb A; Pancaldi V Bioinformatics; 2021 Nov; 37(21):3989-3991. PubMed ID: 34213523 [TBL] [Abstract][Full Text] [Related]
5. iSwathX: an interactive web-based application for extension of DIA peptide reference libraries. Noor Z; Wu JX; Pascovici D; Mohamedali A; Molloy MP; Baker MS; Ranganathan S Bioinformatics; 2019 Feb; 35(3):538-539. PubMed ID: 30052774 [TBL] [Abstract][Full Text] [Related]
6. HOPS: high-performance library for (non-)uniform sampling of convex-constrained models. Jadebeck JF; Theorell A; Leweke S; Nöh K Bioinformatics; 2021 Jul; 37(12):1776-1777. PubMed ID: 33045081 [TBL] [Abstract][Full Text] [Related]
7. ngsReports: a Bioconductor package for managing FastQC reports and other NGS related log files. Ward CM; To TH; Pederson SM Bioinformatics; 2020 Apr; 36(8):2587-2588. PubMed ID: 31841127 [TBL] [Abstract][Full Text] [Related]
11. Edlib: a C/C ++ library for fast, exact sequence alignment using edit distance. Šošic M; Šikic M Bioinformatics; 2017 May; 33(9):1394-1395. PubMed ID: 28453688 [TBL] [Abstract][Full Text] [Related]
12. DNABarcodeCompatibility: an R-package for optimizing DNA-barcode combinations in multiplex sequencing experiments. Trébeau C; Boutet de Monvel J; Wong Jun Tai F; Petit C; Etournay R Bioinformatics; 2019 Aug; 35(15):2690-2691. PubMed ID: 30576403 [TBL] [Abstract][Full Text] [Related]
13. libSBOLj3: a graph-based library for design and data exchange in synthetic biology. Mısırlı G Bioinformatics; 2023 Aug; 39(8):. PubMed ID: 37624918 [TBL] [Abstract][Full Text] [Related]
14. BYASE: a Python library for estimating gene and isoform level allele-specific expression. Dong L; Wang J; Wang G Bioinformatics; 2020 Dec; 36(19):4955-4956. PubMed ID: 32678892 [TBL] [Abstract][Full Text] [Related]
15. ccNetViz: a WebGL-based JavaScript library for visualization of large networks. Saska A; Tichy D; Moore R; Rasquinha A; Akdas C; Zhao X; Fabbri R; Jeličić A; Grover G; Jotwani H; Shadab M; Helikar RM; Helikar T Bioinformatics; 2020 Aug; 36(16):4527-4529. PubMed ID: 32516383 [TBL] [Abstract][Full Text] [Related]