These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

138 related articles for article (PubMed ID: 32845281)

  • 1. RabbitMash: accelerating hash-based genome analysis on modern multi-core architectures.
    Yin Z; Xu X; Zhang J; Wei Y; Schmidt B; Liu W
    Bioinformatics; 2021 May; 37(6):873-875. PubMed ID: 32845281
    [TBL] [Abstract][Full Text] [Related]  

  • 2. RabbitQC: high-speed scalable quality control for sequencing data.
    Yin Z; Zhang H; Liu M; Zhang W; Song H; Lan H; Wei Y; Niu B; Schmidt B; Liu W
    Bioinformatics; 2021 May; 37(4):573-574. PubMed ID: 32790850
    [TBL] [Abstract][Full Text] [Related]  

  • 3. RabbitKSSD: accelerating genome distance estimation on modern multi-core architectures.
    Xu X; Yin Z; Yan L; Yi H; Wang H; Schmidt B; Liu W
    Bioinformatics; 2023 Nov; 39(11):. PubMed ID: 37971961
    [TBL] [Abstract][Full Text] [Related]  

  • 4. RabbitV: fast detection of viruses and microorganisms in sequencing data on multi-core architectures.
    Zhang H; Chang Q; Yin Z; Xu X; Wei Y; Schmidt B; Liu W
    Bioinformatics; 2022 May; 38(10):2932-2933. PubMed ID: 35561184
    [TBL] [Abstract][Full Text] [Related]  

  • 5. BGSA: a bit-parallel global sequence alignment toolkit for multi-core and many-core architectures.
    Zhang J; Lan H; Chan Y; Shang Y; Schmidt B; Liu W
    Bioinformatics; 2019 Jul; 35(13):2306-2308. PubMed ID: 30445566
    [TBL] [Abstract][Full Text] [Related]  

  • 6. RabbitFX: Efficient Framework for FASTA/Q File Parsing on Modern Multi-Core Platforms.
    Zhang H; Song H; Xu X; Chang Q; Wang M; Wei Y; Yin Z; Schmidt B; Liu W
    IEEE/ACM Trans Comput Biol Bioinform; 2023; 20(3):2341-2348. PubMed ID: 36327193
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Kmer-db: instant evolutionary distance estimation.
    Deorowicz S; Gudys A; Dlugosz M; Kokot M; Danek A
    Bioinformatics; 2019 Jan; 35(1):133-136. PubMed ID: 29986074
    [TBL] [Abstract][Full Text] [Related]  

  • 8. ASTRAL-MP: scaling ASTRAL to very large datasets using randomization and parallelization.
    Yin J; Zhang C; Mirarab S
    Bioinformatics; 2019 Oct; 35(20):3961-3969. PubMed ID: 30903685
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Phylonium: fast estimation of evolutionary distances from large samples of similar genomes.
    Klötzl F; Haubold B
    Bioinformatics; 2020 Apr; 36(7):2040-2046. PubMed ID: 31790149
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Very Fast Tree: speeding up the estimation of phylogenies for large alignments through parallelization and vectorization strategies.
    Piñeiro C; Abuín JM; Pichel JC
    Bioinformatics; 2020 Nov; 36(17):4658-4659. PubMed ID: 32573652
    [TBL] [Abstract][Full Text] [Related]  

  • 11. CUDA-BLASTP: accelerating BLASTP on CUDA-enabled graphics hardware.
    Liu W; Schmidt B; Müller-Wittig W
    IEEE/ACM Trans Comput Biol Bioinform; 2011; 8(6):1678-84. PubMed ID: 21339531
    [TBL] [Abstract][Full Text] [Related]  

  • 12. BinDash, software for fast genome distance estimation on a typical personal laptop.
    Zhao X
    Bioinformatics; 2019 Feb; 35(4):671-673. PubMed ID: 30052763
    [TBL] [Abstract][Full Text] [Related]  

  • 13. YAMDA: thousandfold speedup of EM-based motif discovery using deep learning libraries and GPU.
    Quang D; Guan Y; Parker SCJ
    Bioinformatics; 2018 Oct; 34(20):3578-3580. PubMed ID: 29790915
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Fast and compact matching statistics analytics.
    Cunial F; Denas O; Belazzougui D
    Bioinformatics; 2022 Mar; 38(7):1838-1845. PubMed ID: 35134833
    [TBL] [Abstract][Full Text] [Related]  

  • 15. TeraPCA: a fast and scalable software package to study genetic variation in tera-scale genotypes.
    Bose A; Kalantzis V; Kontopoulou EM; Elkady M; Paschou P; Drineas P
    Bioinformatics; 2019 Oct; 35(19):3679-3683. PubMed ID: 30957838
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Mash: fast genome and metagenome distance estimation using MinHash.
    Ondov BD; Treangen TJ; Melsted P; Mallonee AB; Bergman NH; Koren S; Phillippy AM
    Genome Biol; 2016 Jun; 17(1):132. PubMed ID: 27323842
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Compression of genomic sequencing reads via hash-based reordering: algorithm and analysis.
    Chandak S; Tatwawadi K; Weissman T
    Bioinformatics; 2018 Feb; 34(4):558-567. PubMed ID: 29444237
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Shouji: a fast and efficient pre-alignment filter for sequence alignment.
    Alser M; Hassan H; Kumar A; Mutlu O; Alkan C
    Bioinformatics; 2019 Nov; 35(21):4255-4263. PubMed ID: 30923804
    [TBL] [Abstract][Full Text] [Related]  

  • 19. rHAT: fast alignment of noisy long reads with regional hashing.
    Liu B; Guan D; Teng M; Wang Y
    Bioinformatics; 2016 Jun; 32(11):1625-31. PubMed ID: 26568628
    [TBL] [Abstract][Full Text] [Related]  

  • 20. SOPanG: online text searching over a pan-genome.
    Cislak A; Grabowski S; Holub J
    Bioinformatics; 2018 Dec; 34(24):4290-4292. PubMed ID: 29939210
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.