235 related articles for article (PubMed ID: 32875401)
1. Sharing and organizing research products as R packages.
Vuorre M; Crump MJC
Behav Res Methods; 2021 Apr; 53(2):792-802. PubMed ID: 32875401
[TBL] [Abstract][Full Text] [Related]
2. Creating and sharing reproducible research code the workflowr way.
Blischak JD; Carbonetto P; Stephens M
F1000Res; 2019; 8():1749. PubMed ID: 31723427
[TBL] [Abstract][Full Text] [Related]
3. Workflow sharing with automated metadata validation and test execution to improve the reusability of published workflows.
Suetake H; Fukusato T; Igarashi T; Ohta T
Gigascience; 2022 Dec; 12():. PubMed ID: 36810800
[TBL] [Abstract][Full Text] [Related]
4. The Risa R/Bioconductor package: integrative data analysis from experimental metadata and back again.
González-Beltrán A; Neumann S; Maguire E; Sansone SA; Rocca-Serra P
BMC Bioinformatics; 2014; 15 Suppl 1(Suppl 1):S11. PubMed ID: 24564732
[TBL] [Abstract][Full Text] [Related]
5. Centralized project-specific metadata platforms: toolkit provides new perspectives on open data management within multi-institution and multidisciplinary research projects.
Child AW; Hinds J; Sheneman L; Buerki S
BMC Res Notes; 2022 Mar; 15(1):106. PubMed ID: 35303952
[TBL] [Abstract][Full Text] [Related]
6. NeuroPycon: An open-source python toolbox for fast multi-modal and reproducible brain connectivity pipelines.
Meunier D; Pascarella A; Altukhov D; Jas M; Combrisson E; Lajnef T; Bertrand-Dubois D; Hadid V; Alamian G; Alves J; Barlaam F; Saive AL; Dehgan A; Jerbi K
Neuroimage; 2020 Oct; 219():117020. PubMed ID: 32522662
[TBL] [Abstract][Full Text] [Related]
7. ppx: Programmatic Access to Proteomics Data Repositories.
Fondrie WE; Bittremieux W; Noble WS
J Proteome Res; 2021 Sep; 20(9):4621-4624. PubMed ID: 34342226
[TBL] [Abstract][Full Text] [Related]
8. Reproducible bioinformatics project: a community for reproducible bioinformatics analysis pipelines.
Kulkarni N; Alessandrì L; Panero R; Arigoni M; Olivero M; Ferrero G; Cordero F; Beccuti M; Calogero RA
BMC Bioinformatics; 2018 Oct; 19(Suppl 10):349. PubMed ID: 30367595
[TBL] [Abstract][Full Text] [Related]
9. MESSES: Software for Transforming Messy Research Datasets into Clean Submissions to Metabolomics Workbench for Public Sharing.
Thompson PT; Moseley HNB
Metabolites; 2023 Jul; 13(7):. PubMed ID: 37512549
[TBL] [Abstract][Full Text] [Related]
10. Improving the usability of open health service delivery simulation models using Python and web apps.
Monks T; Harper A
NIHR Open Res; 2023; 3():48. PubMed ID: 37881450
[TBL] [Abstract][Full Text] [Related]
11. Curation of BIDS (CuBIDS): A workflow and software package for streamlining reproducible curation of large BIDS datasets.
Covitz S; Tapera TM; Adebimpe A; Alexander-Bloch AF; Bertolero MA; Feczko E; Franco AR; Gur RE; Gur RC; Hendrickson T; Houghton A; Mehta K; Murtha K; Perrone AJ; Robert-Fitzgerald T; Schabdach JM; Shinohara RT; Vogel JW; Zhao C; Fair DA; Milham MP; Cieslak M; Satterthwaite TD
Neuroimage; 2022 Nov; 263():119609. PubMed ID: 36064140
[TBL] [Abstract][Full Text] [Related]
12. Radtools: R utilities for convenient extraction of medical image metadata.
Russell PH; Ghosh D
F1000Res; 2018; 7():. PubMed ID: 31131079
[TBL] [Abstract][Full Text] [Related]
13. ISA API: An open platform for interoperable life science experimental metadata.
Johnson D; Batista D; Cochrane K; Davey RP; Etuk A; Gonzalez-Beltran A; Haug K; Izzo M; Larralde M; Lawson TN; Minotto A; Moreno P; Nainala VC; O'Donovan C; Pireddu L; Roger P; Shaw F; Steinbeck C; Weber RJM; Sansone SA; Rocca-Serra P
Gigascience; 2021 Sep; 10(9):. PubMed ID: 34528664
[TBL] [Abstract][Full Text] [Related]
14. BiocPkgTools: Toolkit for mining the
Su S; Carey VJ; Shepherd L; Ritchie M; Morgan MT; Davis S
F1000Res; 2019; 8():752. PubMed ID: 31249680
[No Abstract] [Full Text] [Related]
15. AMModels: An R package for storing models, data, and metadata to facilitate adaptive management.
Donovan TM; Katz JE
PLoS One; 2018; 13(2):e0188966. PubMed ID: 29489825
[TBL] [Abstract][Full Text] [Related]
16. Improving functional magnetic resonance imaging reproducibility.
Pernet C; Poline JB
Gigascience; 2015; 4():15. PubMed ID: 25830019
[TBL] [Abstract][Full Text] [Related]
17. tidyMicro: a pipeline for microbiome data analysis and visualization using the tidyverse in R.
Carpenter CM; Frank DN; Williamson K; Arbet J; Wagner BD; Kechris K; Kroehl ME
BMC Bioinformatics; 2021 Feb; 22(1):41. PubMed ID: 33526006
[TBL] [Abstract][Full Text] [Related]
18. The GCTx format and cmap{Py, R, M, J} packages: resources for optimized storage and integrated traversal of annotated dense matrices.
Enache OM; Lahr DL; Natoli TE; Litichevskiy L; Wadden D; Flynn C; Gould J; Asiedu JK; Narayan R; Subramanian A
Bioinformatics; 2019 Apr; 35(8):1427-1429. PubMed ID: 30203022
[TBL] [Abstract][Full Text] [Related]
19. The Scientific Filesystem.
Sochat V
Gigascience; 2018 May; 7(5):. PubMed ID: 29718213
[TBL] [Abstract][Full Text] [Related]
20. CREDO: a friendly Customizable, REproducible, DOcker file generator for bioinformatics applications.
Alessandri S; Ratto ML; Rabellino S; Piacenti G; Contaldo SG; Pernice S; Beccuti M; Calogero RA; Alessandri L
BMC Bioinformatics; 2024 Mar; 25(1):110. PubMed ID: 38475691
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
