272 related articles for article (PubMed ID: 32879011)
1. Stable unmethylated DNA demarcates expressed genes and their cis-regulatory space in plant genomes.
Crisp PA; Marand AP; Noshay JM; Zhou P; Lu Z; Schmitz RJ; Springer NM
Proc Natl Acad Sci U S A; 2020 Sep; 117(38):23991-24000. PubMed ID: 32879011
[TBL] [Abstract][Full Text] [Related]
2. Stability of DNA methylation and chromatin accessibility in structurally diverse maize genomes.
Noshay JM; Liang Z; Zhou P; Crisp PA; Marand AP; Hirsch CN; Schmitz RJ; Springer NM
G3 (Bethesda); 2021 Aug; 11(8):. PubMed ID: 34849810
[TBL] [Abstract][Full Text] [Related]
3. Assessing the regulatory potential of transposable elements using chromatin accessibility profiles of maize transposons.
Noshay JM; Marand AP; Anderson SN; Zhou P; Mejia Guerra MK; Lu Z; O'Connor CH; Crisp PA; Hirsch CN; Schmitz RJ; Springer NM
Genetics; 2021 Mar; 217(1):1-13. PubMed ID: 33683350
[TBL] [Abstract][Full Text] [Related]
4. Genome-wide identification of regulatory DNA elements and protein-binding footprints using signatures of open chromatin in Arabidopsis.
Zhang W; Zhang T; Wu Y; Jiang J
Plant Cell; 2012 Jul; 24(7):2719-31. PubMed ID: 22773751
[TBL] [Abstract][Full Text] [Related]
5. Proliferation of Regulatory DNA Elements Derived from Transposable Elements in the Maize Genome.
Zhao H; Zhang W; Chen L; Wang L; Marand AP; Wu Y; Jiang J
Plant Physiol; 2018 Apr; 176(4):2789-2803. PubMed ID: 29463772
[TBL] [Abstract][Full Text] [Related]
6. Optimized reduced representation bisulfite sequencing reveals tissue-specific mCHH islands in maize.
Hsu FM; Yen MR; Wang CT; Lin CY; Wang CR; Chen PY
Epigenetics Chromatin; 2017 Aug; 10(1):42. PubMed ID: 28854962
[TBL] [Abstract][Full Text] [Related]
7. Genome-wide mapping of transcriptional enhancer candidates using DNA and chromatin features in maize.
Oka R; Zicola J; Weber B; Anderson SN; Hodgman C; Gent JI; Wesselink JJ; Springer NM; Hoefsloot HCJ; Turck F; Stam M
Genome Biol; 2017 Jul; 18(1):137. PubMed ID: 28732548
[TBL] [Abstract][Full Text] [Related]
8. Differential nuclease sensitivity profiling of chromatin reveals biochemical footprints coupled to gene expression and functional DNA elements in maize.
Vera DL; Madzima TF; Labonne JD; Alam MP; Hoffman GG; Girimurugan SB; Zhang J; McGinnis KM; Dennis JH; Bass HW
Plant Cell; 2014 Oct; 26(10):3883-93. PubMed ID: 25361955
[TBL] [Abstract][Full Text] [Related]
9. RNA-directed DNA methylation enforces boundaries between heterochromatin and euchromatin in the maize genome.
Li Q; Gent JI; Zynda G; Song J; Makarevitch I; Hirsch CD; Hirsch CN; Dawe RK; Madzima TF; McGinnis KM; Lisch D; Schmitz RJ; Vaughn MW; Springer NM
Proc Natl Acad Sci U S A; 2015 Nov; 112(47):14728-33. PubMed ID: 26553984
[TBL] [Abstract][Full Text] [Related]
10. Maize RNA PolIV affects the expression of genes with nearby TE insertions and has a genome-wide repressive impact on transcription.
Forestan C; Farinati S; Aiese Cigliano R; Lunardon A; Sanseverino W; Varotto S
BMC Plant Biol; 2017 Oct; 17(1):161. PubMed ID: 29025411
[TBL] [Abstract][Full Text] [Related]
11. Open chromatin reveals the functional maize genome.
Rodgers-Melnick E; Vera DL; Bass HW; Buckler ES
Proc Natl Acad Sci U S A; 2016 May; 113(22):E3177-84. PubMed ID: 27185945
[TBL] [Abstract][Full Text] [Related]
12. The accessible chromatin landscape of the human genome.
Thurman RE; Rynes E; Humbert R; Vierstra J; Maurano MT; Haugen E; Sheffield NC; Stergachis AB; Wang H; Vernot B; Garg K; John S; Sandstrom R; Bates D; Boatman L; Canfield TK; Diegel M; Dunn D; Ebersol AK; Frum T; Giste E; Johnson AK; Johnson EM; Kutyavin T; Lajoie B; Lee BK; Lee K; London D; Lotakis D; Neph S; Neri F; Nguyen ED; Qu H; Reynolds AP; Roach V; Safi A; Sanchez ME; Sanyal A; Shafer A; Simon JM; Song L; Vong S; Weaver M; Yan Y; Zhang Z; Zhang Z; Lenhard B; Tewari M; Dorschner MO; Hansen RS; Navas PA; Stamatoyannopoulos G; Iyer VR; Lieb JD; Sunyaev SR; Akey JM; Sabo PJ; Kaul R; Furey TS; Dekker J; Crawford GE; Stamatoyannopoulos JA
Nature; 2012 Sep; 489(7414):75-82. PubMed ID: 22955617
[TBL] [Abstract][Full Text] [Related]
13. The prevalence, evolution and chromatin signatures of plant regulatory elements.
Lu Z; Marand AP; Ricci WA; Ethridge CL; Zhang X; Schmitz RJ
Nat Plants; 2019 Dec; 5(12):1250-1259. PubMed ID: 31740772
[TBL] [Abstract][Full Text] [Related]
14. Long-range interactions between proximal and distal regulatory regions in maize.
Li E; Liu H; Huang L; Zhang X; Dong X; Song W; Zhao H; Lai J
Nat Commun; 2019 Jun; 10(1):2633. PubMed ID: 31201330
[TBL] [Abstract][Full Text] [Related]
15. Differential methylation during maize leaf growth targets developmentally regulated genes.
Candaele J; Demuynck K; Mosoti D; Beemster GT; Inzé D; Nelissen H
Plant Physiol; 2014 Mar; 164(3):1350-64. PubMed ID: 24488968
[TBL] [Abstract][Full Text] [Related]
16. The regulatory code for transcriptional response diversity and its relation to genome structural properties in A. thaliana.
Walther D; Brunnemann R; Selbig J
PLoS Genet; 2007 Feb; 3(2):e11. PubMed ID: 17291162
[TBL] [Abstract][Full Text] [Related]
17. The Heterogeneity in the Landscape of Gene Dominance in Maize is Accompanied by Unique Chromatin Environments.
Yin L; Xu G; Yang J; Zhao M
Mol Biol Evol; 2022 Oct; 39(10):. PubMed ID: 36130304
[TBL] [Abstract][Full Text] [Related]
18. Inter-individual variation in DNA methylation is largely restricted to tissue-specific differentially methylated regions in maize.
Lauria M; Echegoyen-Nava RA; Rodríguez-Ríos D; Zaina S; Lund G
BMC Plant Biol; 2017 Feb; 17(1):52. PubMed ID: 28231765
[TBL] [Abstract][Full Text] [Related]
19. Putting DNA methylation in context: from genomes to gene expression in plants.
Niederhuth CE; Schmitz RJ
Biochim Biophys Acta Gene Regul Mech; 2017 Jan; 1860(1):149-156. PubMed ID: 27590871
[TBL] [Abstract][Full Text] [Related]
20. ZmMBD101 is a DNA-binding protein that maintains Mutator elements chromatin in a repressive state in maize.
Questa JI; Rius SP; Casadevall R; Casati P
Plant Cell Environ; 2016 Jan; 39(1):174-84. PubMed ID: 26147461
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]