BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

183 related articles for article (PubMed ID: 32886770)

  • 1. ASTRAL-Pro: Quartet-Based Species-Tree Inference despite Paralogy.
    Zhang C; Scornavacca C; Molloy EK; Mirarab S
    Mol Biol Evol; 2020 Nov; 37(11):3292-3307. PubMed ID: 32886770
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A comparative study of SVDquartets and other coalescent-based species tree estimation methods.
    Chou J; Gupta A; Yaduvanshi S; Davidson R; Nute M; Mirarab S; Warnow T
    BMC Genomics; 2015; 16 Suppl 10(Suppl 10):S2. PubMed ID: 26449249
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Analysis of Paralogs in Target Enrichment Data Pinpoints Multiple Ancient Polyploidy Events in Alchemilla s.l. (Rosaceae).
    Morales-Briones DF; Gehrke B; Huang CH; Liston A; Ma H; Marx HE; Tank DC; Yang Y
    Syst Biol; 2021 Dec; 71(1):190-207. PubMed ID: 33978764
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Shared single copy genes are generally reliable for inferring phylogenetic relationships among polyploid taxa.
    Naranjo JG; Sither CB; Conant GC
    Mol Phylogenet Evol; 2024 Jul; 196():108087. PubMed ID: 38677353
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Improving quartet graph construction for scalable and accurate species tree estimation from gene trees.
    Han Y; Molloy EK
    Genome Res; 2023 Jul; 33(7):1042-1052. PubMed ID: 37197990
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Phylogenomic species tree estimation in the presence of incomplete lineage sorting and horizontal gene transfer.
    Davidson R; Vachaspati P; Mirarab S; Warnow T
    BMC Genomics; 2015; 16 Suppl 10(Suppl 10):S1. PubMed ID: 26450506
    [TBL] [Abstract][Full Text] [Related]  

  • 7. The Effect of Copy Number Hemiplasy on Gene Family Evolution.
    Li Q; Chan YB; Galtier N; Scornavacca C
    Syst Biol; 2024 Feb; ():. PubMed ID: 38330161
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Phylogenomic comparative methods: Accurate evolutionary inferences in the presence of gene tree discordance.
    Hibbins MS; Breithaupt LC; Hahn MW
    Proc Natl Acad Sci U S A; 2023 May; 120(22):e2220389120. PubMed ID: 37216509
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Median quartet tree search algorithms using optimal subtree prune and regraft.
    Arasti S; Mirarab S
    Algorithms Mol Biol; 2024 Mar; 19(1):12. PubMed ID: 38481327
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Testing for Polytomies in Phylogenetic Species Trees Using Quartet Frequencies.
    Sayyari E; Mirarab S
    Genes (Basel); 2018 Feb; 9(3):. PubMed ID: 29495636
    [TBL] [Abstract][Full Text] [Related]  

  • 11. AleRax: a tool for gene and species tree co-estimation and reconciliation under a probabilistic model of gene duplication, transfer, and loss.
    Morel B; Williams TA; Stamatakis A; Szöllősi GJ
    Bioinformatics; 2024 Mar; 40(4):. PubMed ID: 38514421
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Generation of accurate, expandable phylogenomic trees with uDance.
    Balaban M; Jiang Y; Zhu Q; McDonald D; Knight R; Mirarab S
    Nat Biotechnol; 2024 May; 42(5):768-777. PubMed ID: 37500914
    [TBL] [Abstract][Full Text] [Related]  

  • 13. The influence of the number of tree searches on maximum likelihood inference in phylogenomics.
    Liu C; Zhou X; Li Y; Hittinger CT; Pan R; Huang J; Chen XX; Rokas A; Chen Y; Shen XX
    Syst Biol; 2024 Jun; ():. PubMed ID: 38940001
    [TBL] [Abstract][Full Text] [Related]  

  • 14. ASTRID: Accurate Species TRees from Internode Distances.
    Vachaspati P; Warnow T
    BMC Genomics; 2015; 16 Suppl 10(Suppl 10):S3. PubMed ID: 26449326
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Artifactual Orthologs and the Need for Diligent Data Exploration in Complex Phylogenomic Datasets: A museomic case study from the Andean flora.
    Frost L; Bedoya AM; Lagomarsino L
    Syst Biol; 2024 Jan; ():. PubMed ID: 38170162
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Parsimonious inference of hybridization in the presence of incomplete lineage sorting.
    Yu Y; Barnett RM; Nakhleh L
    Syst Biol; 2013 Sep; 62(5):738-51. PubMed ID: 23736104
    [TBL] [Abstract][Full Text] [Related]  

  • 17. FastMulRFS: fast and accurate species tree estimation under generic gene duplication and loss models.
    Molloy EK; Warnow T
    Bioinformatics; 2020 Jul; 36(Suppl_1):i57-i65. PubMed ID: 32657396
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Weighted ASTRID: fast and accurate species trees from weighted internode distances.
    Liu B; Warnow T
    Algorithms Mol Biol; 2023 Jul; 18(1):6. PubMed ID: 37468904
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A phylogenomic perspective on interspecific competition.
    Louw NL; Wolfe BE; Uricchio LH
    Ecol Lett; 2024 Feb; 27(2):e14359. PubMed ID: 38332550
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Genome distance and phylogenetic inference accommodating gene duplication, loss and new gene input.
    Gu X
    Mol Phylogenet Evol; 2023 Dec; 189():107916. PubMed ID: 37742882
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.