These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

124 related articles for article (PubMed ID: 32891108)

  • 1. Reformulation of the self-guided molecular simulation method.
    Wu X; Brooks BR
    J Chem Phys; 2020 Sep; 153(9):094112. PubMed ID: 32891108
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Toward canonical ensemble distribution from self-guided Langevin dynamics simulation.
    Wu X; Brooks BR
    J Chem Phys; 2011 Apr; 134(13):134108. PubMed ID: 21476744
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Force-momentum-based self-guided Langevin dynamics: a rapid sampling method that approaches the canonical ensemble.
    Wu X; Brooks BR
    J Chem Phys; 2011 Nov; 135(20):204101. PubMed ID: 22128922
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Replica exchanging self-guided Langevin dynamics for efficient and accurate conformational sampling.
    Wu X; Hodoscek M; Brooks BR
    J Chem Phys; 2012 Jul; 137(4):044106. PubMed ID: 22852596
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Self-guided Langevin dynamics via generalized Langevin equation.
    Wu X; Brooks BR; Vanden-Eijnden E
    J Comput Chem; 2016 Mar; 37(6):595-601. PubMed ID: 26183423
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Efficient and Unbiased Sampling of Biomolecular Systems in the Canonical Ensemble: A Review of Self-Guided Langevin Dynamics.
    Wu X; Damjanovic A; Brooks BR
    Adv Chem Phys; 2012 Jan; 150():255-326. PubMed ID: 23913991
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Targeted conformational search with map-restrained self-guided Langevin dynamics: application to flexible fitting into electron microscopic density maps.
    Wu X; Subramaniam S; Case DA; Wu KW; Brooks BR
    J Struct Biol; 2013 Sep; 183(3):429-440. PubMed ID: 23876978
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Enhanced Sampling in Free Energy Calculations: Combining SGLD with the Bennett's Acceptance Ratio and Enveloping Distribution Sampling Methods.
    König G; Miller BT; Boresch S; Wu X; Brooks BR
    J Chem Theory Comput; 2012 Oct; 8(10):3650-62. PubMed ID: 26593010
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Protein Folding Simulations Combining Self-Guided Langevin Dynamics and Temperature-Based Replica Exchange.
    Lee MS; Olson MA
    J Chem Theory Comput; 2010 Aug; 6(8):2477-87. PubMed ID: 26613500
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Comparison between self-guided Langevin dynamics and molecular dynamics simulations for structure refinement of protein loop conformations.
    Olson MA; Chaudhury S; Lee MS
    J Comput Chem; 2011 Nov; 32(14):3014-22. PubMed ID: 21793008
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Collective Langevin dynamics of conformational motions in proteins.
    Lange OF; Grubmüller H
    J Chem Phys; 2006 Jun; 124(21):214903. PubMed ID: 16774438
    [TBL] [Abstract][Full Text] [Related]  

  • 12. The multi-dimensional generalized Langevin equation for conformational motion of proteins.
    Lee HS; Ahn SH; Darve EF
    J Chem Phys; 2019 May; 150(17):174113. PubMed ID: 31067888
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Enhanced Sampling of Interdomain Motion Using Map-Restrained Langevin Dynamics and NMR: Application to Pin1.
    Bouchard JJ; Xia J; Case DA; Peng JW
    J Mol Biol; 2018 Jul; 430(14):2164-2180. PubMed ID: 29775635
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Brownian motion in inhomogeneous suspensions.
    Yang M; Ripoll M
    Phys Rev E Stat Nonlin Soft Matter Phys; 2013 Jun; 87(6):062110. PubMed ID: 23848630
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A combined quasi-continuum/Langevin equation approach to study the self-diffusion dynamics of confined fluids.
    Sanghi T; Aluru NR
    J Chem Phys; 2013 Mar; 138(12):124109. PubMed ID: 23556711
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Likelihood-based non-Markovian models from molecular dynamics.
    Vroylandt H; Goudenège L; Monmarché P; Pietrucci F; Rotenberg B
    Proc Natl Acad Sci U S A; 2022 Mar; 119(13):e2117586119. PubMed ID: 35320038
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Global Langevin model of multidimensional biomolecular dynamics.
    Schaudinnus N; Lickert B; Biswas M; Stock G
    J Chem Phys; 2016 Nov; 145(18):184114. PubMed ID: 27846702
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Structure refinement of protein model decoys requires accurate side-chain placement.
    Olson MA; Lee MS
    Proteins; 2013 Mar; 81(3):469-78. PubMed ID: 23070940
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Flexible fitting to cryo-EM density map using ensemble molecular dynamics simulations.
    Miyashita O; Kobayashi C; Mori T; Sugita Y; Tama F
    J Comput Chem; 2017 Jun; 38(16):1447-1461. PubMed ID: 28370077
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Random Force in Molecular Dynamics with Electronic Friction.
    Hertl N; Martin-Barrios R; Galparsoro O; Larrégaray P; Auerbach DJ; Schwarzer D; Wodtke AM; Kandratsenka A
    J Phys Chem C Nanomater Interfaces; 2021 Jul; 125(26):14468-14473. PubMed ID: 34267855
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.