These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

171 related articles for article (PubMed ID: 32893299)

  • 1. Challenges in gene-oriented approaches for pangenome content discovery.
    Bonnici V; Maresi E; Giugno R
    Brief Bioinform; 2021 May; 22(3):. PubMed ID: 32893299
    [TBL] [Abstract][Full Text] [Related]  

  • 2. PanDelos-frags: A methodology for discovering pangenomic content of incomplete microbial assemblies.
    Bonnici V; Mengoni C; Mangoni M; Franco G; Giugno R
    J Biomed Inform; 2023 Dec; 148():104552. PubMed ID: 37995844
    [TBL] [Abstract][Full Text] [Related]  

  • 3. PANPROVA: pangenomic prokaryotic evolution of full assemblies.
    Bonnici V; Giugno R
    Bioinformatics; 2022 Apr; 38(9):2631-2632. PubMed ID: 35289871
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A brief review of software tools for pangenomics.
    Xiao J; Zhang Z; Wu J; Yu J
    Genomics Proteomics Bioinformatics; 2015 Feb; 13(1):73-6. PubMed ID: 25721608
    [TBL] [Abstract][Full Text] [Related]  

  • 5. panX: pan-genome analysis and exploration.
    Ding W; Baumdicker F; Neher RA
    Nucleic Acids Res; 2018 Jan; 46(1):e5. PubMed ID: 29077859
    [TBL] [Abstract][Full Text] [Related]  

  • 6. MetaPGN: a pipeline for construction and graphical visualization of annotated pangenome networks.
    Peng Y; Tang S; Wang D; Zhong H; Jia H; Cai X; Zhang Z; Xiao M; Yang H; Wang J; Kristiansen K; Xu X; Li J
    Gigascience; 2018 Nov; 7(11):. PubMed ID: 30277499
    [TBL] [Abstract][Full Text] [Related]  

  • 7. zDB: bacterial comparative genomics made easy.
    Marquis B; Pillonel T; Carrara A; Bertelli C
    mSystems; 2024 Jul; 9(7):e0047324. PubMed ID: 38940522
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Hierarchical sets: analyzing pangenome structure through scalable set visualizations.
    Pedersen TL
    Bioinformatics; 2017 Jun; 33(11):1604-1612. PubMed ID: 28130242
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Producing polished prokaryotic pangenomes with the Panaroo pipeline.
    Tonkin-Hill G; MacAlasdair N; Ruis C; Weimann A; Horesh G; Lees JA; Gladstone RA; Lo S; Beaudoin C; Floto RA; Frost SDW; Corander J; Bentley SD; Parkhill J
    Genome Biol; 2020 Jul; 21(1):180. PubMed ID: 32698896
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Phenetic Comparison of Prokaryotic Genomes Using k-mers.
    Déraspe M; Raymond F; Boisvert S; Culley A; Roy PH; Laviolette F; Corbeil J
    Mol Biol Evol; 2017 Oct; 34(10):2716-2729. PubMed ID: 28957508
    [TBL] [Abstract][Full Text] [Related]  

  • 11. ODGI: understanding pangenome graphs.
    Guarracino A; Heumos S; Nahnsen S; Prins P; Garrison E
    Bioinformatics; 2022 Jun; 38(13):3319-3326. PubMed ID: 35552372
    [TBL] [Abstract][Full Text] [Related]  

  • 12. PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph.
    Gautreau G; Bazin A; Gachet M; Planel R; Burlot L; Dubois M; Perrin A; Médigue C; Calteau A; Cruveiller S; Matias C; Ambroise C; Rocha EPC; Vallenet D
    PLoS Comput Biol; 2020 Mar; 16(3):e1007732. PubMed ID: 32191703
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Comparative Genomics for Prokaryotes.
    Setubal JC; Almeida NF; Wattam AR
    Methods Mol Biol; 2018; 1704():55-78. PubMed ID: 29277863
    [TBL] [Abstract][Full Text] [Related]  

  • 14. BlastGraph: a comparative genomics tool based on BLAST and graph algorithms.
    Ye Y; Wei B; Wen L; Rayner S
    Bioinformatics; 2013 Dec; 29(24):3222-4. PubMed ID: 24068035
    [TBL] [Abstract][Full Text] [Related]  

  • 15. PanDelos: a dictionary-based method for pan-genome content discovery.
    Bonnici V; Giugno R; Manca V
    BMC Bioinformatics; 2018 Nov; 19(Suppl 15):437. PubMed ID: 30497358
    [TBL] [Abstract][Full Text] [Related]  

  • 16. simurg: simulate bacterial pangenomes in R.
    Ferrés I; Fresia P; Iraola G
    Bioinformatics; 2020 Feb; 36(4):1273-1274. PubMed ID: 31584605
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Step-by-Step Bacterial Genome Comparison.
    Carhuaricra-Huaman D; Setubal JC
    Methods Mol Biol; 2024; 2802():107-134. PubMed ID: 38819558
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Interest of bacterial pangenome analyses in clinical microbiology.
    Anani H; Zgheib R; Hasni I; Raoult D; Fournier PE
    Microb Pathog; 2020 Dec; 149():104275. PubMed ID: 32562810
    [TBL] [Abstract][Full Text] [Related]  

  • 19. BMX: a tool for computing bacterial phyletic composition from orthologous maps.
    Kulohoma BW
    BMC Res Notes; 2015 Feb; 8():51. PubMed ID: 25756192
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Accurate reconstruction of bacterial pan- and core genomes with PEPPAN.
    Zhou Z; Charlesworth J; Achtman M
    Genome Res; 2020 Nov; 30(11):1667-1679. PubMed ID: 33055096
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.