96 related articles for article (PubMed ID: 32895716)
1. Detecting Signatures of Positive Selection against a Backdrop of Compensatory Processes.
Chi PB; Kosater WM; Liberles DA
Mol Biol Evol; 2020 Nov; 37(11):3353-3362. PubMed ID: 32895716
[TBL] [Abstract][Full Text] [Related]
2. Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution.
Yang Z
Mol Biol Evol; 1998 May; 15(5):568-73. PubMed ID: 9580986
[TBL] [Abstract][Full Text] [Related]
3. Weak selection on synonymous codons substantially inflates
Rahman S; Kosakovsky Pond SL; Webb A; Hey J
Proc Natl Acad Sci U S A; 2021 May; 118(20):. PubMed ID: 33972434
[TBL] [Abstract][Full Text] [Related]
4. The influence of selection for protein stability on dN/dS estimations.
Dasmeh P; Serohijos AW; Kepp KP; Shakhnovich EI
Genome Biol Evol; 2014 Oct; 6(10):2956-67. PubMed ID: 25355808
[TBL] [Abstract][Full Text] [Related]
5. Nonsynonymous, synonymous and nonsense mutations in human cancer-related genes undergo stronger purifying selections than expectation.
Chu D; Wei L
BMC Cancer; 2019 Apr; 19(1):359. PubMed ID: 30991970
[TBL] [Abstract][Full Text] [Related]
6. Estimating absolute rates of synonymous and nonsynonymous nucleotide substitution in order to characterize natural selection and date species divergences.
Seo TK; Kishino H; Thorne JL
Mol Biol Evol; 2004 Jul; 21(7):1201-13. PubMed ID: 15014159
[TBL] [Abstract][Full Text] [Related]
7. The roles of positive and negative selection in the molecular evolution of insect endosymbionts.
Fry AJ; Wernegreen JJ
Gene; 2005 Aug; 355():1-10. PubMed ID: 16039807
[TBL] [Abstract][Full Text] [Related]
8. Detecting positive and purifying selection at synonymous sites in yeast and worm.
Zhou T; Gu W; Wilke CO
Mol Biol Evol; 2010 Aug; 27(8):1912-22. PubMed ID: 20231333
[TBL] [Abstract][Full Text] [Related]
9. Consolidation of slow or fast but not moderately evolving genes at the level of pathways and processes.
Vinogradov AE
Gene; 2015 Apr; 561(1):30-4. PubMed ID: 25707747
[TBL] [Abstract][Full Text] [Related]
10. A method for detecting positive selection at single amino acid sites.
Suzuki Y; Gojobori T
Mol Biol Evol; 1999 Oct; 16(10):1315-28. PubMed ID: 10563013
[TBL] [Abstract][Full Text] [Related]
11. Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages.
Yang Z; Nielsen R
Mol Biol Evol; 2002 Jun; 19(6):908-17. PubMed ID: 12032247
[TBL] [Abstract][Full Text] [Related]
12. The population genetics of dN/dS.
Kryazhimskiy S; Plotkin JB
PLoS Genet; 2008 Dec; 4(12):e1000304. PubMed ID: 19081788
[TBL] [Abstract][Full Text] [Related]
13. The distribution of fitness effects among synonymous mutations in a gene under directional selection.
Lebeuf-Taylor E; McCloskey N; Bailey SF; Hinz A; Kassen R
Elife; 2019 Jul; 8():. PubMed ID: 31322500
[TBL] [Abstract][Full Text] [Related]
14. Detecting signatures of selection from DNA sequences using Datamonkey.
Poon AF; Frost SD; Pond SL
Methods Mol Biol; 2009; 537():163-83. PubMed ID: 19378144
[TBL] [Abstract][Full Text] [Related]
15. Analysis of selection in protein-coding sequences accounting for common biases.
Del Amparo R; Branco C; Arenas J; Vicens A; Arenas M
Brief Bioinform; 2021 Sep; 22(5):. PubMed ID: 33479739
[TBL] [Abstract][Full Text] [Related]
16. Evolutionary genomics: detecting selection needs comparative data.
Nielsen R; Hubisz MJ
Nature; 2005 Jan; 433(7023):E6; discussion E7-8. PubMed ID: 15662372
[TBL] [Abstract][Full Text] [Related]
17. The positive correlation between dN/dS and dS in mammals is due to runs of adjacent substitutions.
Stoletzki N; Eyre-Walker A
Mol Biol Evol; 2011 Apr; 28(4):1371-80. PubMed ID: 21115654
[TBL] [Abstract][Full Text] [Related]
18. Low rates of synonymous mutations in sequences of Mycobacterium tuberculosis GyrA and KatG genes.
Khrustalev VV; Arjomandzadegan M; Barkovsky EV; Titov LP
Tuberculosis (Edinb); 2012 Jul; 92(4):333-44. PubMed ID: 22521568
[TBL] [Abstract][Full Text] [Related]
19. Detecting Adaptation in Protein-Coding Genes Using a Bayesian Site-Heterogeneous Mutation-Selection Codon Substitution Model.
Rodrigue N; Lartillot N
Mol Biol Evol; 2017 Jan; 34(1):204-214. PubMed ID: 27744408
[TBL] [Abstract][Full Text] [Related]
20. Synonymous Site-to-Site Substitution Rate Variation Dramatically Inflates False Positive Rates of Selection Analyses: Ignore at Your Own Peril.
Wisotsky SR; Kosakovsky Pond SL; Shank SD; Muse SV
Mol Biol Evol; 2020 Aug; 37(8):2430-2439. PubMed ID: 32068869
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
