263 related articles for article (PubMed ID: 32913225)
1. Real-time monitoring of single ZTP riboswitches reveals a complex and kinetically controlled decision landscape.
Hua B; Jones CP; Mitra J; Murray PJ; Rosenthal R; Ferré-D'Amaré AR; Ha T
Nat Commun; 2020 Sep; 11(1):4531. PubMed ID: 32913225
[TBL] [Abstract][Full Text] [Related]
2. Ligand Modulates Cross-Coupling between Riboswitch Folding and Transcriptional Pausing.
Widom JR; Nedialkov YA; Rai V; Hayes RL; Brooks CL; Artsimovitch I; Walter NG
Mol Cell; 2018 Nov; 72(3):541-552.e6. PubMed ID: 30388413
[TBL] [Abstract][Full Text] [Related]
3. Single-molecule FRET studies on the cotranscriptional folding of a thiamine pyrophosphate riboswitch.
Uhm H; Kang W; Ha KS; Kang C; Hohng S
Proc Natl Acad Sci U S A; 2018 Jan; 115(2):331-336. PubMed ID: 29279370
[TBL] [Abstract][Full Text] [Related]
4. Cotranscriptional folding of a riboswitch at nucleotide resolution.
Watters KE; Strobel EJ; Yu AM; Lis JT; Lucks JB
Nat Struct Mol Biol; 2016 Dec; 23(12):1124-1131. PubMed ID: 27798597
[TBL] [Abstract][Full Text] [Related]
5. Parallel Discovery Strategies Provide a Basis for Riboswitch Ligand Design.
Tran B; Pichling P; Tenney L; Connelly CM; Moon MH; Ferré-D'Amaré AR; Schneekloth JS; Jones CP
Cell Chem Biol; 2020 Oct; 27(10):1241-1249.e4. PubMed ID: 32795418
[TBL] [Abstract][Full Text] [Related]
6. Co-crystal structure of the Fusobacterium ulcerans ZTP riboswitch using an X-ray free-electron laser.
Jones C; Tran B; Conrad C; Stagno J; Trachman R; Fischer P; Meents A; Ferré-D'Amaré A
Acta Crystallogr F Struct Biol Commun; 2019 Jul; 75(Pt 7):496-500. PubMed ID: 31282869
[TBL] [Abstract][Full Text] [Related]
7. The dynamic nature of RNA as key to understanding riboswitch mechanisms.
Haller A; Soulière MF; Micura R
Acc Chem Res; 2011 Dec; 44(12):1339-48. PubMed ID: 21678902
[TBL] [Abstract][Full Text] [Related]
8. Direct observation of cotranscriptional folding in an adenine riboswitch.
Frieda KL; Block SM
Science; 2012 Oct; 338(6105):397-400. PubMed ID: 23087247
[TBL] [Abstract][Full Text] [Related]
9. Efficient computation of co-transcriptional RNA-ligand interaction dynamics.
Wolfinger MT; Flamm C; Hofacker IL
Methods; 2018 Jul; 143():70-76. PubMed ID: 29730250
[TBL] [Abstract][Full Text] [Related]
10. The conformational landscape of transcription intermediates involved in the regulation of the ZMP-sensing riboswitch from Thermosinus carboxydivorans.
Binas O; Schamber T; Schwalbe H
Nucleic Acids Res; 2020 Jul; 48(12):6970-6979. PubMed ID: 32479610
[TBL] [Abstract][Full Text] [Related]
11. Single-Molecule Approaches for the Characterization of Riboswitch Folding Mechanisms.
Boudreault J; Perez-Gonzalez DC; Penedo JC; Lafontaine DA
Methods Mol Biol; 2015; 1334():101-7. PubMed ID: 26404145
[TBL] [Abstract][Full Text] [Related]
12. A ligand-gated strand displacement mechanism for ZTP riboswitch transcription control.
Strobel EJ; Cheng L; Berman KE; Carlson PD; Lucks JB
Nat Chem Biol; 2019 Nov; 15(11):1067-1076. PubMed ID: 31636437
[TBL] [Abstract][Full Text] [Related]
13. Observation of coordinated RNA folding events by systematic cotranscriptional RNA structure probing.
Szyjka CE; Strobel EJ
Nat Commun; 2023 Nov; 14(1):7839. PubMed ID: 38030633
[TBL] [Abstract][Full Text] [Related]
14. Monitoring co-transcriptional folding of riboswitches through helicase unwinding.
Jones CP; Panja S; Woodson SA; Ferré-D'Amaré AR
Methods Enzymol; 2019; 623():209-227. PubMed ID: 31239047
[TBL] [Abstract][Full Text] [Related]
15. Pausing guides RNA folding to populate transiently stable RNA structures for riboswitch-based transcription regulation.
Steinert H; Sochor F; Wacker A; Buck J; Helmling C; Hiller F; Keyhani S; Noeske J; Grimm S; Rudolph MM; Keller H; Mooney RA; Landick R; Suess B; Fürtig B; Wöhnert J; Schwalbe H
Elife; 2017 May; 6():. PubMed ID: 28541183
[TBL] [Abstract][Full Text] [Related]
16. Transcriptional pausing coordinates folding of the aptamer domain and the expression platform of a riboswitch.
Perdrizet GA; Artsimovitch I; Furman R; Sosnick TR; Pan T
Proc Natl Acad Sci U S A; 2012 Feb; 109(9):3323-8. PubMed ID: 22331895
[TBL] [Abstract][Full Text] [Related]
17. Alkaline pH has an unexpected effect on transcriptional pausing during synthesis of the Escherichia coli pH-responsive riboswitch.
Stephen C; Mishanina TV
J Biol Chem; 2022 Sep; 298(9):102302. PubMed ID: 35934054
[TBL] [Abstract][Full Text] [Related]
18. The regulation mechanism of yitJ and metF riboswitches.
Gong S; Wang Y; Zhang W
J Chem Phys; 2015 Jul; 143(4):045103. PubMed ID: 26233166
[TBL] [Abstract][Full Text] [Related]
19. A nascent riboswitch helix orchestrates robust transcriptional regulation through signal integration.
Chauvier A; Dandpat SS; Romero R; Walter NG
Nat Commun; 2024 May; 15(1):3955. PubMed ID: 38729929
[TBL] [Abstract][Full Text] [Related]
20. Cotranscriptional RNA strand exchange underlies the gene regulation mechanism in a purine-sensing transcriptional riboswitch.
Cheng L; White EN; Brandt NL; Yu AM; Chen AA; Lucks JB
Nucleic Acids Res; 2022 Nov; 50(21):12001-12018. PubMed ID: 35348734
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
