BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

210 related articles for article (PubMed ID: 32915952)

  • 1. Fast gap-affine pairwise alignment using the wavefront algorithm.
    Marco-Sola S; Moure JC; Moreto M; Espinosa A
    Bioinformatics; 2021 May; 37(4):456-463. PubMed ID: 32915952
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Optimal gap-affine alignment in O(s) space.
    Marco-Sola S; Eizenga JM; Guarracino A; Paten B; Garrison E; Moreto M
    Bioinformatics; 2023 Feb; 39(2):. PubMed ID: 36749013
    [TBL] [Abstract][Full Text] [Related]  

  • 3. WFA-GPU: gap-affine pairwise read-alignment using GPUs.
    Aguado-Puig Q; Doblas M; Matzoros C; Espinosa A; Moure JC; Marco-Sola S; Moreto M
    Bioinformatics; 2023 Dec; 39(12):. PubMed ID: 37975878
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Introducing difference recurrence relations for faster semi-global alignment of long sequences.
    Suzuki H; Kasahara M
    BMC Bioinformatics; 2018 Feb; 19(Suppl 1):45. PubMed ID: 29504909
    [TBL] [Abstract][Full Text] [Related]  

  • 5. lordFAST: sensitive and Fast Alignment Search Tool for LOng noisy Read sequencing Data.
    Haghshenas E; Sahinalp SC; Hach F
    Bioinformatics; 2019 Jan; 35(1):20-27. PubMed ID: 30561550
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Minimap2: pairwise alignment for nucleotide sequences.
    Li H
    Bioinformatics; 2018 Sep; 34(18):3094-3100. PubMed ID: 29750242
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Chaining for accurate alignment of erroneous long reads to acyclic variation graphs.
    Ma J; Cáceres M; Salmela L; Mäkinen V; Tomescu AI
    Bioinformatics; 2023 Aug; 39(8):. PubMed ID: 37494467
    [TBL] [Abstract][Full Text] [Related]  

  • 8. LAMSA: fast split read alignment with long approximate matches.
    Liu B; Gao Y; Wang Y
    Bioinformatics; 2017 Jan; 33(2):192-201. PubMed ID: 27667793
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A framework for high-throughput sequence alignment using real processing-in-memory systems.
    Diab S; Nassereldine A; Alser M; Gómez Luna J; Mutlu O; El Hajj I
    Bioinformatics; 2023 May; 39(5):. PubMed ID: 36971586
    [TBL] [Abstract][Full Text] [Related]  

  • 10. QAlign: aligning nanopore reads accurately using current-level modeling.
    Joshi D; Mao S; Kannan S; Diggavi S
    Bioinformatics; 2021 May; 37(5):625-633. PubMed ID: 33051648
    [TBL] [Abstract][Full Text] [Related]  

  • 11. GateKeeper: a new hardware architecture for accelerating pre-alignment in DNA short read mapping.
    Alser M; Hassan H; Xin H; Ergin O; Mutlu O; Alkan C
    Bioinformatics; 2017 Nov; 33(21):3355-3363. PubMed ID: 28575161
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Vargas: heuristic-free alignment for assessing linear and graph read aligners.
    Darby CA; Gaddipati R; Schatz MC; Langmead B
    Bioinformatics; 2020 Jun; 36(12):3712-3718. PubMed ID: 32321164
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Pairwise alignment of nucleotide sequences using maximal exact matches.
    Bayat A; Gaëta B; Ignjatovic A; Parameswaran S
    BMC Bioinformatics; 2019 May; 20(1):261. PubMed ID: 31113356
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Hybrid correction of highly noisy long reads using a variable-order de Bruijn graph.
    Morisse P; Lecroq T; Lefebvre A
    Bioinformatics; 2018 Dec; 34(24):4213-4222. PubMed ID: 29955770
    [TBL] [Abstract][Full Text] [Related]  

  • 15. ARYANA: Aligning Reads by Yet Another Approach.
    Gholami M; Arbabi A; Sharifi-Zarchi A; Chitsaz H; Sadeghi M
    BMC Bioinformatics; 2014; 15 Suppl 9(Suppl 9):S12. PubMed ID: 25252881
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Parallel Tiled Codes Implementing the Smith-Waterman Alignment Algorithm for Two and Three Sequences.
    Palkowski M; Bielecki W
    J Comput Biol; 2018 Oct; 25(10):1106-1119. PubMed ID: 29993269
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Acceleration of short and long DNA read mapping without loss of accuracy using suffix array.
    Tárraga J; Arnau V; Martínez H; Moreno R; Cazorla D; Salavert-Torres J; Blanquer-Espert I; Dopazo J; Medina I
    Bioinformatics; 2014 Dec; 30(23):3396-8. PubMed ID: 25143289
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Arioc: GPU-accelerated alignment of short bisulfite-treated reads.
    Wilton R; Li X; Feinberg AP; Szalay AS
    Bioinformatics; 2018 Aug; 34(15):2673-2675. PubMed ID: 29554207
    [TBL] [Abstract][Full Text] [Related]  

  • 19. libgapmis: extending short-read alignments.
    Alachiotis N; Berger S; Flouri T; Pissis SP; Stamatakis A
    BMC Bioinformatics; 2013; 14 Suppl 11(Suppl 11):S4. PubMed ID: 24564250
    [TBL] [Abstract][Full Text] [Related]  

  • 20. HISEA: HIerarchical SEed Aligner for PacBio data.
    Khiste N; Ilie L
    BMC Bioinformatics; 2017 Dec; 18(1):564. PubMed ID: 29258419
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.