254 related articles for article (PubMed ID: 32920861)
1. Comparison of markers for the monitoring of freshwater benthic biodiversity through DNA metabarcoding.
Ficetola GF; Boyer F; Valentini A; Bonin A; Meyer A; Dejean T; Gaboriaud C; Usseglio-Polatera P; Taberlet P
Mol Ecol; 2021 Jul; 30(13):3189-3202. PubMed ID: 32920861
[TBL] [Abstract][Full Text] [Related]
2. Morphological vs. DNA metabarcoding approaches for the evaluation of stream ecological status with benthic invertebrates: Testing different combinations of markers and strategies of data filtering.
Meyer A; Boyer F; Valentini A; Bonin A; Ficetola GF; Beisel JN; Bouquerel J; Wagner P; Gaboriaud C; Leese F; Dejean T; Taberlet P; Usseglio-Polatera P
Mol Ecol; 2021 Jul; 30(13):3203-3220. PubMed ID: 33150613
[TBL] [Abstract][Full Text] [Related]
3. Taxonomic accuracy and complementarity between bulk and eDNA metabarcoding provides an alternative to morphology for biological assessment of freshwater macroinvertebrates.
Múrria C; Wangensteen OS; Somma S; Väisänen L; Fortuño P; Arnedo MA; Prat N
Sci Total Environ; 2024 Jul; 935():173243. PubMed ID: 38761946
[TBL] [Abstract][Full Text] [Related]
4. Environmental metabarcodes for insects: in silico PCR reveals potential for taxonomic bias.
Clarke LJ; Soubrier J; Weyrich LS; Cooper A
Mol Ecol Resour; 2014 Nov; 14(6):1160-70. PubMed ID: 24751203
[TBL] [Abstract][Full Text] [Related]
5. Modelling technical and biological biases in macroinvertebrate community assessment from bulk preservative using multiple metabarcoding markers.
Martins FMS; Porto M; Feio MJ; Egeter B; Bonin A; Serra SRQ; Taberlet P; Beja P
Mol Ecol; 2021 Jul; 30(13):3221-3238. PubMed ID: 32860303
[TBL] [Abstract][Full Text] [Related]
6. Assessing changes in stream macroinvertebrate communities across ecological gradients using morphological versus DNA metabarcoding approaches.
Martins FMS; Feio MJ; Porto M; Filipe AF; Bonin A; Serra SRQ; Alves PC; Taberlet P; Beja P
Sci Total Environ; 2021 Nov; 797():149030. PubMed ID: 34311381
[TBL] [Abstract][Full Text] [Related]
7. In silico assessment of 18S rDNA metabarcoding markers for the characterization of nematode communities.
Ficetola GF; Guerrieri A; Cantera I; Bonin A
PLoS One; 2024; 19(4):e0298905. PubMed ID: 38578734
[TBL] [Abstract][Full Text] [Related]
8. Testing the potential of a ribosomal 16S marker for DNA metabarcoding of insects.
Elbrecht V; Taberlet P; Dejean T; Valentini A; Usseglio-Polatera P; Beisel JN; Coissac E; Boyer F; Leese F
PeerJ; 2016; 4():e1966. PubMed ID: 27114891
[TBL] [Abstract][Full Text] [Related]
9. Freshwater diatom biomonitoring through benthic kick-net metabarcoding.
Maitland VC; Robinson CV; Porter TM; Hajibabaei M
PLoS One; 2020; 15(11):e0242143. PubMed ID: 33206700
[TBL] [Abstract][Full Text] [Related]
10. Watered-down biodiversity? A comparison of metabarcoding results from DNA extracted from matched water and bulk tissue biomonitoring samples.
Hajibabaei M; Porter TM; Robinson CV; Baird DJ; Shokralla S; Wright MTG
PLoS One; 2019; 14(12):e0225409. PubMed ID: 31830042
[TBL] [Abstract][Full Text] [Related]
11. Comparison of environmental DNA and bulk-sample metabarcoding using highly degenerate cytochrome c oxidase I primers.
Macher JN; Vivancos A; Piggott JJ; Centeno FC; Matthaei CD; Leese F
Mol Ecol Resour; 2018 Nov; 18(6):1456-1468. PubMed ID: 30129704
[TBL] [Abstract][Full Text] [Related]
12. COI metabarcoding primer choice affects richness and recovery of indicator taxa in freshwater systems.
Hajibabaei M; Porter TM; Wright M; Rudar J
PLoS One; 2019; 14(9):e0220953. PubMed ID: 31513585
[TBL] [Abstract][Full Text] [Related]
13. Hidden diversity: DNA metabarcoding reveals hyper-diverse benthic invertebrate communities.
Gleason JE; Hanner RH; Cottenie K
BMC Ecol Evol; 2023 May; 23(1):19. PubMed ID: 37198575
[TBL] [Abstract][Full Text] [Related]
14. Assessing biodiversity of a freshwater benthic macroinvertebrate community through non-destructive environmental barcoding of DNA from preservative ethanol.
Hajibabaei M; Spall JL; Shokralla S; van Konynenburg S
BMC Ecol; 2012 Dec; 12():28. PubMed ID: 23259585
[TBL] [Abstract][Full Text] [Related]
15. Can DNA-Based Ecosystem Assessments Quantify Species Abundance? Testing Primer Bias and Biomass--Sequence Relationships with an Innovative Metabarcoding Protocol.
Elbrecht V; Leese F
PLoS One; 2015; 10(7):e0130324. PubMed ID: 26154168
[TBL] [Abstract][Full Text] [Related]
16. Increased performance of DNA metabarcoding of macroinvertebrates by taxonomic sorting.
Beentjes KK; Speksnijder AGCL; Schilthuizen M; Hoogeveen M; Pastoor R; van der Hoorn BB
PLoS One; 2019; 14(12):e0226527. PubMed ID: 31841568
[TBL] [Abstract][Full Text] [Related]
17. Effect of marker choice and thermal cycling protocol on zooplankton DNA metabarcoding studies.
Clarke LJ; Beard JM; Swadling KM; Deagle BE
Ecol Evol; 2017 Feb; 7(3):873-883. PubMed ID: 28168024
[TBL] [Abstract][Full Text] [Related]
18. Have the cake and eat it: Optimizing nondestructive DNA metabarcoding of macroinvertebrate samples for freshwater biomonitoring.
Martins FMS; Galhardo M; Filipe AF; Teixeira A; Pinheiro P; Paupério J; Alves PC; Beja P
Mol Ecol Resour; 2019 Jul; 19(4):863-876. PubMed ID: 30901128
[TBL] [Abstract][Full Text] [Related]
19. Targeted gene enrichment and high-throughput sequencing for environmental biomonitoring: a case study using freshwater macroinvertebrates.
Dowle EJ; Pochon X; C Banks J; Shearer K; Wood SA
Mol Ecol Resour; 2016 Sep; 16(5):1240-54. PubMed ID: 26583904
[TBL] [Abstract][Full Text] [Related]
20. Evaluating ethanol-based sample preservation to facilitate use of DNA barcoding in routine freshwater biomonitoring programs using benthic macroinvertebrates.
Stein ED; White BP; Mazor RD; Miller PE; Pilgrim EM
PLoS One; 2013; 8(1):e51273. PubMed ID: 23308097
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
