115 related articles for article (PubMed ID: 32923688)
1. Hamiltonian Monte Carlo sampling to estimate past population dynamics using the skygrid coalescent model in a Bayesian phylogenetics framework.
Baele G; Gill MS; Lemey P; Suchard MA
Wellcome Open Res; 2020; 5():53. PubMed ID: 32923688
[TBL] [Abstract][Full Text] [Related]
2. Bayesian Estimation of Past Population Dynamics in BEAST 1.10 Using the Skygrid Coalescent Model.
Hill V; Baele G
Mol Biol Evol; 2019 Nov; 36(11):2620-2628. PubMed ID: 31364710
[TBL] [Abstract][Full Text] [Related]
3. Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10.
Suchard MA; Lemey P; Baele G; Ayres DL; Drummond AJ; Rambaut A
Virus Evol; 2018 Jan; 4(1):vey016. PubMed ID: 29942656
[TBL] [Abstract][Full Text] [Related]
4. An efficient Bayesian inference framework for coalescent-based nonparametric phylodynamics.
Lan S; Palacios JA; Karcher M; Minin VN; Shahbaba B
Bioinformatics; 2015 Oct; 31(20):3282-9. PubMed ID: 26093147
[TBL] [Abstract][Full Text] [Related]
5. Performance of Hamiltonian Monte Carlo and No-U-Turn Sampler for estimating genetic parameters and breeding values.
Nishio M; Arakawa A
Genet Sel Evol; 2019 Dec; 51(1):73. PubMed ID: 31823719
[TBL] [Abstract][Full Text] [Related]
6. Bayesian Estimation of Population Size Changes by Sampling Tajima's Trees.
Palacios JA; Véber A; Cappello L; Wang Z; Wakeley J; Ramachandran S
Genetics; 2019 Nov; 213(3):967-986. PubMed ID: 31511299
[TBL] [Abstract][Full Text] [Related]
7. Many-core algorithms for high-dimensional gradients on phylogenetic trees.
Gangavarapu K; Ji X; Baele G; Fourment M; Lemey P; Matsen FA; Suchard MA
Bioinformatics; 2024 Feb; 40(2):. PubMed ID: 38243701
[TBL] [Abstract][Full Text] [Related]
8. Jointly Inferring the Dynamics of Population Size and Sampling Intensity from Molecular Sequences.
Parag KV; du Plessis L; Pybus OG
Mol Biol Evol; 2020 Aug; 37(8):2414-2429. PubMed ID: 32003829
[TBL] [Abstract][Full Text] [Related]
9. Online Bayesian Phylodynamic Inference in BEAST with Application to Epidemic Reconstruction.
Gill MS; Lemey P; Suchard MA; Rambaut A; Baele G
Mol Biol Evol; 2020 Jun; 37(6):1832-1842. PubMed ID: 32101295
[TBL] [Abstract][Full Text] [Related]
10. A Bayesian nonparametric approach for uncovering rat hippocampal population codes during spatial navigation.
Linderman SW; Johnson MJ; Wilson MA; Chen Z
J Neurosci Methods; 2016 Apr; 263():36-47. PubMed ID: 26854398
[TBL] [Abstract][Full Text] [Related]
11. Scalable gradients enable Hamiltonian Monte Carlo sampling for phylodynamic inference under episodic birth-death-sampling models.
Shao Y; Magee AF; Vasylyeva TI; Suchard MA
PLoS Comput Biol; 2024 Mar; 20(3):e1011640. PubMed ID: 38551979
[TBL] [Abstract][Full Text] [Related]
12. Scalable gradients enable Hamiltonian Monte Carlo sampling for phylodynamic inference under episodic birth-death-sampling models.
Shao Y; Magee AF; Vasylyeva TI; Suchard MA
bioRxiv; 2023 Nov; ():. PubMed ID: 37961423
[TBL] [Abstract][Full Text] [Related]
13. How Trustworthy Is Your Tree? Bayesian Phylogenetic Effective Sample Size Through the Lens of Monte Carlo Error.
Magee A; Karcher M; Matsen FA; Minin VM
Bayesian Anal; 2024 Jun; 19(2):565-593. PubMed ID: 38665694
[TBL] [Abstract][Full Text] [Related]
14. Comparison between pystan and numpyro in Bayesian item response theory: evaluation of agreement of estimated latent parameters and sampling performance.
Nishio M; Ota E; Matsuo H; Matsunaga T; Miyazaki A; Murakami T
PeerJ Comput Sci; 2023; 9():e1620. PubMed ID: 37869462
[TBL] [Abstract][Full Text] [Related]
15. Relaxed Random Walks at Scale.
Fisher AA; Ji X; Zhang Z; Lemey P; Suchard MA
Syst Biol; 2021 Feb; 70(2):258-267. PubMed ID: 32687171
[TBL] [Abstract][Full Text] [Related]
16. Bayesian Trend Filtering via Proximal Markov Chain Monte Carlo.
Heng Q; Zhou H; Chi EC
J Comput Graph Stat; 2023; 32(3):938-949. PubMed ID: 37822489
[TBL] [Abstract][Full Text] [Related]
17. MASCOT-Skyline integrates population and migration dynamics to enhance phylogeographic reconstructions.
Müller NF; Bouckaert RR; Wu CH; Bedford T
bioRxiv; 2024 Mar; ():. PubMed ID: 38496513
[TBL] [Abstract][Full Text] [Related]
18. Shrinkage-based Random Local Clocks with Scalable Inference.
Fisher AA; Ji X; Nishimura A; Baele G; Lemey P; Suchard MA
Mol Biol Evol; 2023 Nov; 40(11):. PubMed ID: 37950885
[TBL] [Abstract][Full Text] [Related]
19. Estimating population parameters using the structured serial coalescent with Bayesian MCMC inference when some demes are hidden.
Ewing G; Rodrigo A
Evol Bioinform Online; 2007 Feb; 2():227-35. PubMed ID: 19455215
[TBL] [Abstract][Full Text] [Related]
20. Scalable Bayesian Divergence Time Estimation With Ratio Transformations.
Ji X; Fisher AA; Su S; Thorne JL; Potter B; Lemey P; Baele G; Suchard MA
Syst Biol; 2023 Nov; 72(5):1136-1153. PubMed ID: 37458991
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]