133 related articles for article (PubMed ID: 32933023)
21. Prediction of trehalose-metabolic pathway and comparative analysis of KEGG, MetaCyc, and RAST databases based on complete genome of Variovorax sp. PAMC28711.
Shrestha P; Kim MS; Elbasani E; Kim JD; Oh TJ
BMC Genom Data; 2022 Jan; 23(1):4. PubMed ID: 34991451
[TBL] [Abstract][Full Text] [Related]
22. Computational Metabolomics Operations at BioCyc.org.
Karp PD; Billington R; Holland TA; Kothari A; Krummenacker M; Weaver D; Latendresse M; Paley S
Metabolites; 2015 May; 5(2):291-310. PubMed ID: 26011592
[TBL] [Abstract][Full Text] [Related]
23. Metabolome-scale de novo pathway reconstruction using regioisomer-sensitive graph alignments.
Yamanishi Y; Tabei Y; Kotera M
Bioinformatics; 2015 Jun; 31(12):i161-70. PubMed ID: 26072478
[TBL] [Abstract][Full Text] [Related]
24. CLCA: maximum common molecular substructure queries within the MetRxn database.
Kumar A; Maranas CD
J Chem Inf Model; 2014 Dec; 54(12):3417-38. PubMed ID: 25412255
[TBL] [Abstract][Full Text] [Related]
25. Putting The Plant Metabolic Network pathway databases to work: going offline to gain new capabilities.
Dreher K
Methods Mol Biol; 2014; 1083():151-71. PubMed ID: 24218215
[TBL] [Abstract][Full Text] [Related]
26. Computational assignment of the EC numbers for genomic-scale analysis of enzymatic reactions.
Kotera M; Okuno Y; Hattori M; Goto S; Kanehisa M
J Am Chem Soc; 2004 Dec; 126(50):16487-98. PubMed ID: 15600352
[TBL] [Abstract][Full Text] [Related]
27. Comparative evaluation of atom mapping algorithms for balanced metabolic reactions: application to Recon 3D.
Preciat Gonzalez GA; El Assal LRP; Noronha A; Thiele I; Haraldsdóttir HS; Fleming RMT
J Cheminform; 2017 Jun; 9(1):39. PubMed ID: 29086112
[TBL] [Abstract][Full Text] [Related]
28. Critical assessment of human metabolic pathway databases: a stepping stone for future integration.
Stobbe MD; Houten SM; Jansen GA; van Kampen AH; Moerland PD
BMC Syst Biol; 2011 Oct; 5():165. PubMed ID: 21999653
[TBL] [Abstract][Full Text] [Related]
29. Reconstruction of biological pathways and metabolic networks from in silico labeled metabolites.
Hadadi N; Hafner J; Soh KC; Hatzimanikatis V
Biotechnol J; 2017 Jan; 12(1):. PubMed ID: 27897385
[TBL] [Abstract][Full Text] [Related]
30. BED: a Biological Entity Dictionary based on a graph data model.
Godard P; van Eyll J
F1000Res; 2018; 7():195. PubMed ID: 30026924
[TBL] [Abstract][Full Text] [Related]
31. Identification of Conserved Moieties in Metabolic Networks by Graph Theoretical Analysis of Atom Transition Networks.
Haraldsdóttir HS; Fleming RM
PLoS Comput Biol; 2016 Nov; 12(11):e1004999. PubMed ID: 27870845
[TBL] [Abstract][Full Text] [Related]
32. A Computational Solution to Automatically Map Metabolite Libraries in the Context of Genome Scale Metabolic Networks.
Merlet B; Paulhe N; Vinson F; Frainay C; Chazalviel M; Poupin N; Gloaguen Y; Giacomoni F; Jourdan F
Front Mol Biosci; 2016; 3():2. PubMed ID: 26909353
[TBL] [Abstract][Full Text] [Related]
33. Metabolome searcher: a high throughput tool for metabolite identification and metabolic pathway mapping directly from mass spectrometry and using genome restriction.
Dhanasekaran AR; Pearson JL; Ganesan B; Weimer BC
BMC Bioinformatics; 2015 Feb; 16(1):62. PubMed ID: 25887958
[TBL] [Abstract][Full Text] [Related]
34. The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.
Caspi R; Billington R; Ferrer L; Foerster H; Fulcher CA; Keseler IM; Kothari A; Krummenacker M; Latendresse M; Mueller LA; Ong Q; Paley S; Subhraveti P; Weaver DS; Karp PD
Nucleic Acids Res; 2016 Jan; 44(D1):D471-80. PubMed ID: 26527732
[TBL] [Abstract][Full Text] [Related]
35.
Hari A; Zarrabi A; Lobo D
NAR Genom Bioinform; 2024 Mar; 6(1):lqae010. PubMed ID: 38312936
[TBL] [Abstract][Full Text] [Related]
36. A database of unique protein sequence identifiers for proteome studies.
Babnigg G; Giometti CS
Proteomics; 2006 Aug; 6(16):4514-22. PubMed ID: 16858731
[TBL] [Abstract][Full Text] [Related]
37. Construction of an E. Coli genome-scale atom mapping model for MFA calculations.
Ravikirthi P; Suthers PF; Maranas CD
Biotechnol Bioeng; 2011 Jun; 108(6):1372-82. PubMed ID: 21328316
[TBL] [Abstract][Full Text] [Related]
38. Enzyme Annotation and Metabolic Reconstruction Using KEGG.
Kanehisa M
Methods Mol Biol; 2017; 1611():135-145. PubMed ID: 28451977
[TBL] [Abstract][Full Text] [Related]
39. Benchmark Dataset for Training Machine Learning Models to Predict the Pathway Involvement of Metabolites.
Huckvale ED; Powell CD; Jin H; Moseley HNB
Metabolites; 2023 Nov; 13(11):. PubMed ID: 37999216
[TBL] [Abstract][Full Text] [Related]
40. Benchmark dataset for training machine learning models to predict the pathway involvement of metabolites.
Huckvale ED; Powell CD; Jin H; Moseley HNB
bioRxiv; 2023 Oct; ():. PubMed ID: 37873272
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
